JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYO3A_chr10_25929229_26217532	0/0	t0011	774	2	2	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	t0012	773	2	2	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	t0013	774	1	1	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	t0014	773	1	1	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	t0015	774	1	1	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	t0016	773	1	1	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	t0017	774	1	1	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3A_chr10_25929229_26217532	0/0	t0018	773	1	1	0	0	0	0	copy fasta	MYO3A	chr10	25929229	26217532
MYO3B_chr2_170173147_170660167	1/1	t0001	2188	71	15	15	23	7	9	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	t0002	2187	22	5	8	3	1	5	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	t0003	2187	22	5	2	12	0	3	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	t0004	2187	16	15	1	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	t0005	2189	7	1	1	5	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	t0006	2187	5	5	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	t0007	2188	4	4	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	t0008	2187	3	3	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	t0009	2189	3	3	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	t0010	2189	2	0	1	0	1	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	t0011	2188	2	0	0	0	1	1	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	t0012	2188	2	0	0	0	0	2	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	t0013	2191	2	2	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	t0014	2188	2	1	0	1	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	t0015	2187	1	1	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	t0016	2188	1	1	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	t0017	2187	1	1	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	t0018	2188	1	1	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	t0019	2187	1	1	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	t0020	2188	1	1	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	t0021	2188	1	1	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	t0022	2188	1	1	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	t0023	2188	1	1	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	t0024	2188	1	1	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO3B_chr2_170173147_170660167	0/0	t0025	2192	1	1	0	0	0	0	copy fasta	MYO3B	chr2	170173147	170660167
MYO5A_chr15_52302283_52533880	0/0	t0001	6499	49	8	4	34	0	3	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0002	6494	27	1	0	25	0	1	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0003	6497	20	4	9	0	4	3	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0004	6497	19	3	1	12	1	2	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/1	t0005	6497	18	0	1	12	0	4	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0006	6494	17	6	8	0	0	3	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0007	6497	9	4	1	1	0	3	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	1/0	t0008	6488	9	6	2	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0009	6499	8	8	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0010	6494	6	0	3	0	2	1	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0011	6497	5	5	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0012	6499	5	4	0	0	0	1	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0013	6497	4	0	0	4	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0014	6495	4	2	2	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0015	6494	4	0	2	1	0	1	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0016	6504	4	0	1	2	0	1	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0017	6497	4	0	0	4	0	0	copy fasta	MYO5A	chr15	52302283	52533880