JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYO5A_chr15_52302283_52533880	0/0	t0018	6497	4	0	1	0	3	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0019	6497	3	3	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0020	6497	3	3	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0021	6499	3	3	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0022	6499	3	3	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0023	6504	3	0	0	1	0	2	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0024	6499	3	2	1	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0025	6497	3	0	0	1	0	2	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0026	6497	3	0	1	0	2	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0027	6501	3	1	2	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0028	6497	2	2	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0029	6497	2	0	0	2	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0030	6497	2	2	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0031	6497	2	2	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0032	6494	2	0	0	2	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0033	6499	2	0	0	0	0	2	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0034	6497	2	0	0	2	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0035	6497	2	0	1	0	0	1	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0036	6497	1	0	0	0	0	1	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0037	6497	1	1	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0038	6497	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0039	6497	1	1	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0040	6499	1	0	0	0	0	1	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0041	6497	1	1	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0042	6494	1	0	1	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0043	6494	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0044	6494	1	1	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0045	6502	1	0	0	0	0	1	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0046	6501	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0047	6499	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0048	6499	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0049	6499	1	0	0	0	0	1	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0050	6499	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0051	6499	1	1	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0052	6504	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0053	6497	1	0	0	0	0	1	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0054	6504	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0055	6499	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0056	6497	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0057	6497	1	0	0	0	0	1	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0058	6499	1	1	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0059	6488	1	1	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0060	6488	1	1	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0061	6504	1	0	0	0	0	1	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0062	6497	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0063	6499	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0064	6497	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0065	6497	1	0	0	0	0	1	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0066	6497	1	0	0	0	0	1	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0067	6497	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880