JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYO5A_chr15_52302283_52533880	0/0	t0068	6499	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0069	6499	1	0	0	0	0	1	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0070	6499	1	0	0	0	0	1	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0071	6499	1	0	0	0	0	1	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0072	6499	1	0	1	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0073	6499	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0074	6497	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0075	6497	1	1	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0076	6497	1	1	0	0	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0077	6494	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5A_chr15_52302283_52533880	0/0	t0078	6499	1	0	0	1	0	0	copy fasta	MYO5A	chr15	52302283	52533880
MYO5B_chr18_49817789_50200147	0/1	t0001	4037	48	17	15	9	2	4	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	1/0	t0002	4037	46	15	9	16	1	4	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0003	4035	37	2	8	22	0	5	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0004	4037	24	4	5	12	1	2	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0005	4037	15	3	1	9	0	2	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0006	4037	11	10	1	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0007	4037	6	0	0	5	0	1	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0008	4037	5	0	0	5	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0009	4037	5	0	5	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0010	4038	4	0	1	0	0	3	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0011	4037	4	3	1	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0012	4038	3	3	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0013	4037	2	0	0	2	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0014	4037	2	2	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0015	4037	2	0	0	2	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0016	4038	2	2	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0017	4037	2	2	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0018	4037	2	1	1	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0019	4037	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0020	4037	1	0	0	0	0	1	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0021	4038	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0022	4038	1	0	0	1	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0023	4036	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0024	4037	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0025	4037	1	0	0	1	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0026	4037	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0027	4035	1	0	0	1	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0028	4035	1	0	0	1	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0029	4035	1	0	1	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0030	4037	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0031	4037	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0032	4037	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0033	4037	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0034	4037	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0035	4037	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5B_chr18_49817789_50200147	0/0	t0036	4037	1	1	0	0	0	0	copy fasta	MYO5B	chr18	49817789	50200147
MYO5C_chr15_52187322_52300804	0/0	t0001	1748	69	4	9	49	0	7	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0002	1748	68	12	5	42	0	9	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/1	t0003	1741	29	8	12	1	1	6	copy fasta	MYO5C	chr15	52187322	52300804