JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYO5C_chr15_52187322_52300804	0/0	t0004	1749	27	20	6	0	0	1	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0005	1742	24	0	1	23	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0006	1746	16	5	1	10	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0007	1741	15	4	6	2	1	2	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0008	1746	12	1	6	1	1	3	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	1/0	t0009	1749	12	11	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0010	1742	10	0	0	10	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0011	1749	8	0	0	8	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0012	1746	6	0	0	5	0	1	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0013	1745	6	0	3	3	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0014	1747	5	0	1	3	0	1	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0015	1748	5	4	0	0	0	1	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0016	1748	4	0	1	1	0	2	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0017	1748	3	0	2	0	0	1	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0018	1747	3	0	0	3	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0019	1749	3	2	0	1	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0020	1748	2	0	1	0	1	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0021	1749	2	0	2	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0022	1742	2	2	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0023	1748	2	0	0	2	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0024	1744	2	1	1	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0025	1749	2	2	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0026	1746	1	0	1	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0027	1741	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0028	1742	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0029	1747	1	0	1	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0030	1744	1	0	0	0	0	1	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0031	1746	1	0	1	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0032	1747	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0033	1741	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0034	1746	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0035	1742	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0036	1742	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0037	1742	1	0	0	1	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0038	1748	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0039	1748	1	0	0	1	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0040	1748	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0041	1748	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0042	1748	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0043	1748	1	0	0	0	0	1	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0044	1748	1	0	0	1	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0045	1749	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0046	1749	1	0	0	1	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0047	1748	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO5C_chr15_52187322_52300804	0/0	t0048	1749	1	1	0	0	0	0	copy fasta	MYO5C	chr15	52187322	52300804
MYO6_chr6_75744239_75924537	0/0	t0001	4754	40	0	8	26	2	4	copy fasta	MYO6	chr6	75744239	75924537
MYO6_chr6_75744239_75924537	0/0	t0002	4757	19	0	0	18	0	1	copy fasta	MYO6	chr6	75744239	75924537
MYO6_chr6_75744239_75924537	0/0	t0003	4757	15	0	4	7	2	2	copy fasta	MYO6	chr6	75744239	75924537
MYO6_chr6_75744239_75924537	0/0	t0004	4758	15	0	1	11	0	3	copy fasta	MYO6	chr6	75744239	75924537
MYO6_chr6_75744239_75924537	0/0	t0005	4757	13	0	1	12	0	0	copy fasta	MYO6	chr6	75744239	75924537