JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYO9A_chr15_71817291_72123150	0/0	t0047	4839	1	1	0	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	t0048	4838	1	1	0	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	t0049	4838	1	1	0	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	t0050	4832	1	1	0	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	t0051	4817	1	1	0	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	t0052	4836	1	0	0	1	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	t0053	4839	1	0	1	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	t0054	4835	1	0	1	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	t0055	4822	1	1	0	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	t0056	4838	1	1	0	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	1/0	t0057	4832	1	0	0	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	t0058	4836	1	1	0	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	t0059	4818	1	1	0	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	t0060	4836	1	0	1	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9A_chr15_71817291_72123150	0/0	t0061	4835	1	1	0	0	0	0	copy fasta	MYO9A	chr15	71817291	72123150
MYO9B_chr19_17070777_17218286	0/0	t0001	1133	164	51	33	54	9	17	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	1/1	t0002	1133	57	3	9	29	2	12	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	t0003	1133	22	12	5	0	0	5	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	t0004	1133	10	6	3	0	1	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	t0005	1133	3	3	0	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	t0006	1133	1	0	1	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	t0007	1133	1	1	0	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	t0008	1133	1	0	1	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	t0009	1133	1	1	0	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	t0010	1133	1	1	0	0	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYO9B_chr19_17070777_17218286	0/0	t0011	1133	1	0	0	1	0	0	copy fasta	MYO9B	chr19	17070777	17218286
MYOCD_chr17_12660890_12773949	0/1	t0001	5605	23	2	4	6	2	8	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0002	5605	15	2	8	3	2	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0003	5606	11	0	5	2	0	4	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0004	5605	10	0	0	10	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0005	5605	10	1	3	5	0	1	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0006	5606	9	0	0	6	0	3	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0007	5605	6	0	0	6	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0008	5606	6	0	0	5	0	1	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0009	5605	5	0	4	0	0	1	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0010	5600	4	4	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0011	5604	4	0	0	4	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	1/0	t0012	5605	4	3	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0013	5602	3	2	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0014	5606	3	0	0	3	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0015	5604	3	2	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0016	5605	3	3	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0017	5606	3	0	1	1	1	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0018	5604	2	2	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0019	5606	2	0	0	2	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0020	5606	2	0	0	2	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0021	5605	2	0	0	2	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0022	5605	2	0	0	2	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0023	5605	2	1	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0024	5606	2	0	0	2	0	0	copy fasta	MYOCD	chr17	12660890	12773949