Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARID4A_chr14_58293555_58378876	0/1	t0001	2091	246	56	38	115	9	27	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	1/0	t0002	2091	32	18	6	1	1	5	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	t0003	2091	3	0	0	3	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	t0004	2091	2	0	0	2	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	t0005	2091	2	2	0	0	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	t0006	2091	2	2	0	0	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	t0007	2091	1	0	1	0	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	t0008	2091	1	0	0	1	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	t0009	2091	1	0	0	1	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	t0010	2091	1	1	0	0	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	t0011	2091	1	0	1	0	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	t0012	2091	1	1	0	0	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	t0013	2091	1	0	0	1	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4B_chr1_235161902_235333179	1/1	t0001	2084	267	72	58	95	8	32	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	t0002	2084	1	1	0	0	0	0	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	t0003	2084	1	0	0	1	0	0	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	t0004	2084	1	0	0	0	0	1	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	t0005	2084	1	1	0	0	0	0	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	t0006	2084	1	0	0	0	0	1	copy fasta	ARID4B	chr1	235161902	235333179
ARID5A_chr2_96531752_96557634	1/1	t0001	397	331	63	56	160	16	34	copy fasta	ARID5A	chr2	96531752	96557634
ARID5A_chr2_96531752_96557634	0/0	t0002	397	36	28	6	2	0	0	copy fasta	ARID5A	chr2	96531752	96557634
ARID5A_chr2_96531752_96557634	0/0	t0003	397	3	1	2	0	0	0	copy fasta	ARID5A	chr2	96531752	96557634
ARID5A_chr2_96531752_96557634	0/0	t0004	397	2	2	0	0	0	0	copy fasta	ARID5A	chr2	96531752	96557634
ARID5A_chr2_96531752_96557634	0/0	t0005	397	1	0	0	1	0	0	copy fasta	ARID5A	chr2	96531752	96557634
ARID5A_chr2_96531752_96557634	0/0	t0006	395	1	0	0	1	0	0	copy fasta	ARID5A	chr2	96531752	96557634
ARID5B_chr10_61896699_62101944	0/0	t0001	3925	75	25	9	24	6	11	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	t0002	3926	46	12	9	19	2	4	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	t0003	3926	26	5	5	14	0	2	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	t0004	3928	24	1	6	14	0	3	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	t0005	3925	21	10	4	0	3	4	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	t0006	3927	8	2	1	4	1	0	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	t0007	3924	6	3	0	3	0	0	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	t0008	3926	6	6	0	0	0	0	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	t0009	3925	4	1	0	2	0	1	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	t0010	3927	4	2	0	2	0	0	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	t0011	3925	3	0	0	3	0	0	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	t0012	3925	3	1	0	0	1	1	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	t0013	3927	2	1	1	0	0	0	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	t0014	3924	2	0	1	0	1	0	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	t0015	3924	2	2	0	0	0	0	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	t0016	3924	1	0	0	1	0	0	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	t0017	3926	1	1	0	0	0	0	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	t0018	3926	1	0	0	1	0	0	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	t0019	3928	1	1	0	0	0	0	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	t0020	3924	1	1	0	0	0	0	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	t0021	3925	1	0	1	0	0	0	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	t0022	3925	1	0	0	1	0	0	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	t0023	3925	1	0	0	1	0	0	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	t0024	3926	1	0	1	0	0	0	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	t0025	3925	1	0	0	1	0	0	copy fasta	ARID5B	chr10	61896699	62101944