JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
MYOCD_chr17_12660890_12773949	0/0	t0075	5607	1	0	0	1	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0076	5606	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0077	5606	1	0	0	1	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0078	5605	1	0	0	1	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0079	5605	1	0	0	1	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0080	5606	1	0	0	1	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0081	5606	1	0	0	1	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0082	5605	1	0	0	1	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0083	5606	1	0	0	1	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0084	5607	1	0	0	1	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0085	5606	1	0	0	1	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0086	5605	1	0	0	1	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0087	5605	1	0	0	1	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0088	5605	1	0	0	1	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0089	5606	1	0	0	1	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0090	5605	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0091	5605	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0092	5608	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0093	5606	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0094	5605	1	0	0	0	1	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0095	5607	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0096	5606	1	0	0	1	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0097	5605	1	0	0	1	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0098	5605	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0099	5605	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0100	5606	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0101	5605	1	0	0	0	1	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0102	5608	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0103	5600	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0104	5606	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0105	5605	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0106	5605	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0107	5606	1	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0108	5606	1	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0109	5606	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0110	5605	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0111	5605	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0112	5604	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0113	5605	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0114	5607	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0115	5605	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0116	5605	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0117	5604	1	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0118	5605	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0119	5607	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0120	5605	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0121	5606	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0122	5605	1	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0123	5605	1	0	0	1	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0124	5606	1	0	0	1	0	copy fasta	MYOCD	chr17	12660890	12773949