JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYOCD_chr17_12660890_12773949	0/0	t0125	5603	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0126	5605	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0127	5606	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0128	5605	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0129	5605	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0130	5605	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0131	5606	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0132	5606	1	0	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0133	5605	1	0	0	0	1	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0134	5605	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0135	5604	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0136	5606	1	0	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0137	5607	1	0	0	0	0	1	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0138	5606	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0139	5606	1	0	0	0	0	1	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0140	5605	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0141	5607	1	0	0	0	0	1	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0142	5606	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0143	5605	1	0	0	0	0	1	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0144	5605	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0145	5606	1	0	0	0	0	1	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0146	5605	1	0	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0147	5605	1	0	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0148	5605	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0149	5607	1	0	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0150	5605	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0151	5606	1	0	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0152	5604	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0153	5605	1	0	0	0	0	1	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0154	5604	1	0	0	0	1	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0155	5605	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0156	5605	1	0	0	0	0	1	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0157	5605	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0158	5584	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0159	5605	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0160	5604	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0161	5605	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0162	5603	1	0	0	0	0	1	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0163	5603	1	0	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0164	5603	1	0	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0165	5606	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0166	5605	1	0	0	0	0	1	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0167	5605	1	0	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0168	5603	1	0	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0169	5606	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0170	5601	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0171	5606	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0172	5606	1	0	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0173	5607	1	0	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0174	5607	1	0	0	0	0	1	copy fasta	MYOCD	chr17	12660890	12773949