JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYOCD_chr17_12660890_12773949	0/0	t0175	5606	1	0	0	0	0	1	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0176	5607	1	0	0	0	0	1	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0177	5606	1	0	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0178	5606	1	0	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0179	5605	1	0	0	0	1	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0180	5606	1	0	0	0	0	1	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0181	5606	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0182	5605	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0183	5607	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0184	5605	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0185	5605	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0186	5606	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0187	5607	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0188	5605	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0189	5605	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0190	5606	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0191	5605	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0192	5606	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0193	5606	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0194	5605	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0195	5605	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0196	5605	1	0	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0197	5607	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0198	5606	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0199	5606	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0200	5605	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0201	5604	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0202	5606	1	0	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0203	5606	1	0	0	1	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0204	5606	1	0	0	0	0	1	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0205	5605	1	0	1	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0206	5605	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0207	5604	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0208	5606	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0209	5606	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0210	5602	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCD_chr17_12660890_12773949	0/0	t0211	5605	1	1	0	0	0	0	copy fasta	MYOCD	chr17	12660890	12773949
MYOCOS_chr1_171617243_171631888	1/1	t0001	421	408	83	77	187	18	41	copy fasta	MYOCOS	chr1	171617243	171631888
MYOCOS_chr1_171617243_171631888	0/0	t0002	421	2	0	0	1	0	1	copy fasta	MYOCOS	chr1	171617243	171631888
MYOCOS_chr1_171617243_171631888	0/0	t0003	421	1	0	1	0	0	0	copy fasta	MYOCOS	chr1	171617243	171631888
MYOCOS_chr1_171617243_171631888	0/0	t0004	421	1	1	0	0	0	0	copy fasta	MYOCOS	chr1	171617243	171631888
MYOC_chr1_171630417_171657688	1/1	t0001	586	426	90	82	190	18	44	copy fasta	MYOC	chr1	171630417	171657688
MYOC_chr1_171630417_171657688	0/0	t0002	586	8	0	0	8	0	0	copy fasta	MYOC	chr1	171630417	171657688
MYOD1_chr11_17714571_17727136	1/1	t0001	841	329	95	72	106	12	42	copy fasta	MYOD1	chr11	17714571	17727136
MYOD1_chr11_17714571_17727136	0/0	t0002	841	5	0	3	2	0	0	copy fasta	MYOD1	chr11	17714571	17727136
MYOD1_chr11_17714571_17727136	0/0	t0003	841	1	0	1	0	0	0	copy fasta	MYOD1	chr11	17714571	17727136
MYOD1_chr11_17714571_17727136	0/0	t0004	841	1	0	0	1	0	0	copy fasta	MYOD1	chr11	17714571	17727136
MYOD1_chr11_17714571_17727136	0/0	t0005	841	1	0	1	0	0	0	copy fasta	MYOD1	chr11	17714571	17727136
MYOD1_chr11_17714571_17727136	0/0	t0006	841	1	0	1	0	0	0	copy fasta	MYOD1	chr11	17714571	17727136
MYOD1_chr11_17714571_17727136	0/0	t0007	841	1	1	0	0	0	0	copy fasta	MYOD1	chr11	17714571	17727136