JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYOD1_chr11_17714571_17727136	0/0	t0008	841	1	0	0	1	0	0	copy fasta	MYOD1	chr11	17714571	17727136
MYOF_chr10_93301429_93487334	0/1	t0001	675	158	49	45	38	7	18	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	t0002	675	55	10	12	22	1	10	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	1/0	t0003	675	19	17	1	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	t0004	675	2	2	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	t0005	684	2	2	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	t0006	675	2	2	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOF_chr10_93301429_93487334	0/0	t0007	675	2	2	0	0	0	0	copy fasta	MYOF	chr10	93301429	93487334
MYOG_chr1_203078129_203091012	0/1	t0001	830	100	20	25	36	9	9	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0002	830	59	5	13	28	1	12	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0003	830	53	1	3	44	0	5	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0004	829	50	1	4	35	2	8	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0005	829	34	4	19	7	1	3	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0006	832	25	6	1	15	2	1	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0007	831	22	1	11	8	1	1	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0008	831	20	3	3	12	2	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0009	833	14	8	1	5	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0010	827	13	13	0	0	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0011	832	9	5	1	3	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0012	826	8	5	0	2	0	1	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0013	830	6	4	1	1	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0014	830	4	0	0	3	0	1	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0015	827	4	2	1	1	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0016	828	4	0	0	4	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0017	833	4	0	0	2	0	2	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0018	827	3	3	0	0	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0019	828	3	3	0	0	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0020	826	3	3	0	0	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0021	828	2	0	1	0	0	1	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0022	830	2	2	0	0	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0023	832	2	2	0	0	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0024	833	1	1	0	0	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0025	830	1	0	0	1	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0026	830	1	1	0	0	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0027	830	1	0	0	1	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0028	829	1	0	0	1	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0029	832	1	1	0	0	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0030	833	1	1	0	0	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0031	833	1	1	0	0	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0032	832	1	0	0	1	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0033	832	1	0	0	0	0	1	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0034	828	1	1	0	0	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0035	830	1	0	0	1	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	1/0	t0036	833	1	0	0	0	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0037	832	1	0	0	0	0	1	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0038	830	1	1	0	0	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOG_chr1_203078129_203091012	0/0	t0039	832	1	0	0	1	0	0	copy fasta	MYOG	chr1	203078129	203091012
MYOM1_chr18_3061807_3224968	0/0	t0001	650	111	53	23	27	2	6	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	1/1	t0002	650	62	1	18	25	6	10	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	t0003	650	57	15	7	29	2	4	copy fasta	MYOM1	chr18	3061807	3224968