JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYOM1_chr18_3061807_3224968	0/0	t0004	650	33	1	1	29	1	1	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	t0005	650	27	0	4	20	0	3	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	t0006	650	19	1	3	12	1	2	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	t0007	650	7	7	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	t0008	650	4	4	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	t0009	650	3	3	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	t0010	650	2	0	0	0	0	2	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	t0011	650	2	0	0	2	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	t0012	650	1	1	0	0	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	t0013	650	1	0	0	1	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM1_chr18_3061807_3224968	0/0	t0014	650	1	0	0	1	0	0	copy fasta	MYOM1	chr18	3061807	3224968
MYOM2_chr8_2040046_2150456	0/0	t0001	611	300	90	61	114	9	26	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/1	t0002	611	75	3	11	37	5	18	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	t0003	611	11	0	0	11	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	t0004	611	7	0	0	5	0	2	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	t0005	611	5	0	0	5	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	t0006	611	3	3	0	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM2_chr8_2040046_2150456	0/0	t0007	611	2	2	0	0	0	0	copy fasta	MYOM2	chr8	2040046	2150456
MYOM3_chr1_24051041_24117135	0/1	t0001	1447	240	45	37	117	11	29	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	1/0	t0002	1447	74	14	37	6	5	11	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	t0003	1447	21	20	1	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	t0004	1447	12	0	0	12	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	t0005	1447	5	3	2	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	t0006	1447	4	0	0	4	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	t0007	1446	3	3	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	t0008	1447	1	0	1	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	t0009	1447	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	t0010	1447	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	t0011	1447	1	1	0	0	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYOM3_chr1_24051041_24117135	0/0	t0012	1447	1	0	0	1	0	0	copy fasta	MYOM3	chr1	24051041	24117135
MYORG_chr9_34361666_34381898	0/0	t0001	4297	126	16	21	74	2	13	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0002	4297	70	8	4	54	0	4	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	1/0	t0003	4303	57	29	11	11	3	2	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0004	4302	48	2	5	32	1	8	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0005	4302	45	7	19	8	3	8	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0006	4302	13	0	7	0	5	1	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0007	4297	10	0	0	10	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0008	4302	9	8	1	0	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0009	4302	7	0	0	7	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0010	4297	7	7	0	0	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0011	4297	7	0	0	7	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0012	4297	7	0	2	2	0	3	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/1	t0013	4302	6	0	2	0	2	1	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0014	4297	4	0	0	4	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0015	4297	4	0	0	4	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0016	4302	3	3	0	0	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0017	4299	3	0	0	3	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0018	4298	3	1	1	0	0	1	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0019	4297	2	0	1	0	0	1	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0020	4297	2	2	0	0	0	0	copy fasta	MYORG	chr9	34361666	34381898