JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYORG_chr9_34361666_34381898	0/0	t0021	4302	2	2	0	0	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0022	4297	1	0	0	1	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0023	4297	1	0	0	1	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0024	4302	1	1	0	0	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0025	4302	1	0	1	0	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0026	4297	1	1	0	0	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0027	4297	1	0	1	0	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0028	4297	1	0	0	1	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0029	4297	1	0	0	1	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0030	4297	1	0	1	0	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0031	4297	1	1	0	0	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0032	4302	1	0	1	0	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0033	4302	1	0	0	0	0	1	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0034	4302	1	1	0	0	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0035	4297	1	0	0	0	0	1	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0036	4297	1	1	0	0	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0037	4303	1	0	1	0	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYORG_chr9_34361666_34381898	0/0	t0038	4303	1	0	1	0	0	0	copy fasta	MYORG	chr9	34361666	34381898
MYOT_chr5_137862860_137892851	1/0	t0001	772	269	78	60	86	9	35	copy fasta	MYOT	chr5	137862860	137892851
MYOT_chr5_137862860_137892851	0/1	t0002	772	71	2	11	44	3	10	copy fasta	MYOT	chr5	137862860	137892851
MYOT_chr5_137862860_137892851	0/0	t0003	772	8	7	1	0	0	0	copy fasta	MYOT	chr5	137862860	137892851
MYOT_chr5_137862860_137892851	0/0	t0004	772	3	1	0	0	2	0	copy fasta	MYOT	chr5	137862860	137892851
MYOT_chr5_137862860_137892851	0/0	t0005	772	1	0	0	0	0	1	copy fasta	MYOT	chr5	137862860	137892851
MYOZ1_chr10_73626612_73646474	1/1	t0001	401	385	89	54	192	8	40	copy fasta	MYOZ1	chr10	73626612	73646474
MYOZ1_chr10_73626612_73646474	0/0	t0002	401	1	1	0	0	0	0	copy fasta	MYOZ1	chr10	73626612	73646474
MYOZ2_chr4_119130832_119192789	1/1	t0001	1755	123	62	21	16	10	12	copy fasta	MYOZ2	chr4	119130832	119192789
MYOZ2_chr4_119130832_119192789	0/0	t0002	1755	120	14	22	69	4	11	copy fasta	MYOZ2	chr4	119130832	119192789
MYOZ2_chr4_119130832_119192789	0/0	t0003	1755	73	3	18	43	2	7	copy fasta	MYOZ2	chr4	119130832	119192789
MYOZ2_chr4_119130832_119192789	0/0	t0004	1755	39	0	2	36	0	1	copy fasta	MYOZ2	chr4	119130832	119192789
MYOZ2_chr4_119130832_119192789	0/0	t0005	1755	17	1	2	12	1	1	copy fasta	MYOZ2	chr4	119130832	119192789
MYOZ2_chr4_119130832_119192789	0/0	t0006	1755	5	5	0	0	0	0	copy fasta	MYOZ2	chr4	119130832	119192789
MYOZ2_chr4_119130832_119192789	0/0	t0007	1755	4	0	0	0	0	4	copy fasta	MYOZ2	chr4	119130832	119192789
MYOZ2_chr4_119130832_119192789	0/0	t0008	1755	3	3	0	0	0	0	copy fasta	MYOZ2	chr4	119130832	119192789
MYOZ2_chr4_119130832_119192789	0/0	t0009	1755	3	0	0	3	0	0	copy fasta	MYOZ2	chr4	119130832	119192789
MYOZ2_chr4_119130832_119192789	0/0	t0010	1755	3	0	2	0	1	0	copy fasta	MYOZ2	chr4	119130832	119192789
MYOZ2_chr4_119130832_119192789	0/0	t0011	1755	2	2	0	0	0	0	copy fasta	MYOZ2	chr4	119130832	119192789
MYOZ2_chr4_119130832_119192789	0/0	t0012	1755	1	0	0	1	0	0	copy fasta	MYOZ2	chr4	119130832	119192789
MYOZ2_chr4_119130832_119192789	0/0	t0013	1755	1	0	1	0	0	0	copy fasta	MYOZ2	chr4	119130832	119192789
MYOZ3_chr5_150656251_150684368	1/1	t0001	2671	305	54	60	145	13	31	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	t0002	2676	22	21	1	0	0	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	t0003	2677	19	0	0	19	0	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	t0004	2671	17	0	0	14	0	3	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	t0005	2671	9	2	5	0	2	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	t0006	2675	5	5	0	0	0	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	t0007	2676	3	3	0	0	0	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	t0008	2671	3	3	0	0	0	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	t0009	2671	2	2	0	0	0	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	t0010	2671	1	0	0	1	0	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	t0011	2671	1	0	0	0	1	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	t0012	2671	1	1	0	0	0	0	copy fasta	MYOZ3	chr5	150656251	150684368