JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYOZ3_chr5_150656251_150684368	0/0	t0013	2671	1	1	0	0	0	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	t0014	2671	1	0	1	0	0	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	t0015	2671	1	0	1	0	0	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	t0016	2671	1	1	0	0	0	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	t0017	2671	1	1	0	0	0	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYOZ3_chr5_150656251_150684368	0/0	t0018	2671	1	0	0	1	0	0	copy fasta	MYOZ3	chr5	150656251	150684368
MYPN_chr10_68104488_68217017	0/1	t0001	1798	106	10	19	66	1	9	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	t0002	1799	84	31	13	30	3	7	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	1/0	t0003	1799	46	11	8	19	0	7	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	t0004	1799	24	20	4	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	t0005	1799	13	0	0	13	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	t0006	1799	8	6	2	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	t0007	1799	4	0	2	1	0	1	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	t0008	1799	3	0	0	0	1	2	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	t0009	1799	3	3	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	t0010	1799	3	2	1	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	t0011	1798	2	0	0	2	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	t0012	1799	2	0	0	0	1	1	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	t0013	1799	2	1	1	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	t0014	1799	1	0	0	1	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	t0015	1799	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	t0016	1798	1	0	0	1	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	t0017	1798	1	0	0	0	0	1	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	t0018	1799	1	1	0	0	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPN_chr10_68104488_68217017	0/0	t0019	1799	1	0	0	1	0	0	copy fasta	MYPN	chr10	68104488	68217017
MYPOP_chr19_45885023_45907613	1/1	t0001	697	395	86	69	175	18	45	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	t0002	697	3	0	0	3	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	t0003	697	3	3	0	0	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	t0004	697	2	2	0	0	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	t0005	697	1	0	1	0	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	t0006	697	1	0	0	0	0	1	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	t0007	697	1	0	1	0	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	t0008	697	1	1	0	0	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYPOP_chr19_45885023_45907613	0/0	t0009	697	1	0	1	0	0	0	copy fasta	MYPOP	chr19	45885023	45907613
MYRFL_chr12_69820227_69964097	1/0	t0001	858	187	49	33	79	4	21	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	t0002	861	77	6	7	59	0	5	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/1	t0003	858	43	19	19	0	2	2	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	t0004	858	12	12	0	0	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRFL_chr12_69820227_69964097	0/0	t0005	858	3	2	1	0	0	0	copy fasta	MYRFL	chr12	69820227	69964097
MYRF_chr11_61747636_61793518	1/1	t0001	2485	317	90	66	102	16	41	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	t0002	2485	5	0	0	5	0	0	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	t0003	2485	2	2	0	0	0	0	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	t0004	2485	2	0	0	2	0	0	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	t0005	2485	1	1	0	0	0	0	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	t0006	2485	1	1	0	0	0	0	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	t0007	2485	1	0	0	0	0	1	copy fasta	MYRF	chr11	61747636	61793518
MYRF_chr11_61747636_61793518	0/0	t0008	2485	1	0	0	1	0	0	copy fasta	MYRF	chr11	61747636	61793518
MYRIP_chr3_39804609_40265321	1/1	t0001	2494	70	21	9	29	4	5	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	t0002	2494	35	5	7	16	2	5	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	t0003	2491	19	15	3	1	0	0	copy fasta	MYRIP	chr3	39804609	40265321