JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYRIP_chr3_39804609_40265321	0/0	t0004	2491	10	8	2	0	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	t0005	2491	8	1	0	4	0	3	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	t0006	2491	7	7	0	0	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	t0007	2494	5	5	0	0	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	t0008	2488	3	3	0	0	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	t0009	2494	2	2	0	0	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	t0010	2494	2	0	0	0	0	2	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	t0011	2494	1	0	0	0	0	1	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	t0012	2491	1	0	0	1	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	t0013	2494	1	0	0	1	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	t0014	2494	1	1	0	0	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	t0015	2494	1	0	0	1	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	t0016	2494	1	0	0	1	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	t0017	2494	1	1	0	0	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	t0018	2491	1	1	0	0	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYRIP_chr3_39804609_40265321	0/0	t0019	2491	1	0	1	0	0	0	copy fasta	MYRIP	chr3	39804609	40265321
MYSM1_chr1_58649743_58705062	0/0	t0001	5273	58	8	3	39	2	6	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/1	t0002	5275	49	2	8	32	3	3	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0003	5278	46	10	5	25	1	5	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0004	5275	27	3	9	9	2	4	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0005	5277	20	1	4	13	0	2	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	1/0	t0006	5265	17	3	1	9	1	2	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0007	5280	12	1	4	3	0	4	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0008	5277	11	0	7	4	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0009	5271	11	3	0	7	1	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0010	5276	9	4	1	2	0	2	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0011	5274	7	4	0	2	0	1	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0012	5272	6	4	2	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0013	5271	6	1	1	4	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0014	5279	5	0	1	3	0	1	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0015	5292	5	0	0	5	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0016	5261	5	1	2	0	2	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0017	5279	4	0	3	1	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0018	5267	4	0	0	2	0	2	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0019	5274	4	0	0	4	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0020	5275	4	4	0	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0021	5269	3	0	0	2	0	1	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0022	5282	3	0	0	3	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0023	5277	3	2	1	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0024	5267	3	3	0	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0025	5273	3	3	0	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0026	5272	3	3	0	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0027	5272	3	3	0	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0028	5271	3	0	0	3	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0029	5268	3	3	0	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0030	5267	3	0	0	3	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0031	5271	3	1	2	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0032	5271	3	3	0	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0033	5274	2	0	0	2	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0034	5263	2	0	0	1	0	1	copy fasta	MYSM1	chr1	58649743	58705062