JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
MYSM1_chr1_58649743_58705062	0/0	t0035	5276	2	0	0	2	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0036	5269	2	2	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0037	5269	2	1	1	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0038	5278	2	0	2	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0039	5278	2	0	2	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0040	5273	2	2	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0041	5275	2	0	0	0	2	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0042	5273	2	0	0	1	1	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0043	5270	2	1	1	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0044	5267	2	2	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0045	5265	2	2	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0046	5276	1	0	0	1	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0047	5283	1	0	1	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0048	5274	1	0	0	1	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0049	5273	1	0	0	0	1	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0050	5270	1	1	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0051	5259	1	0	0	1	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0052	5253	1	0	0	1	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0053	5271	1	1	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0054	5273	1	1	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0055	5273	1	1	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0056	5272	1	0	0	1	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0057	5265	1	0	1	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0058	5276	1	0	0	1	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0059	5276	1	0	0	1	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0060	5278	1	1	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0061	5279	1	1	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0062	5282	1	0	0	0	1	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0063	5280	1	0	1	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0064	5279	1	0	0	1	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0065	5278	1	0	0	1	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0066	5265	1	1	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0067	5274	1	0	1	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0068	5274	1	1	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0069	5274	1	0	1	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0070	5271	1	1	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0071	5263	1	1	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0072	5272	1	1	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0073	5283	1	0	0	0	1	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0074	5279	1	0	0	1	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0075	5273	1	0	0	1	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0076	5269	1	1	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0077	5263	1	1	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0078	5267	1	1	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0079	5261	1	1	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0080	5261	1	0	1	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0081	5277	1	1	0	0	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0082	5278	1	0	0	1	0	copy fasta	MYSM1	chr1	58649743	58705062
MYSM1_chr1_58649743_58705062	0/0	t0083	5275	1	0	0	1	0	copy fasta	MYSM1	chr1	58649743	58705062
MYT1L_chr2_1784113_2336275	1/1	t0001	3584	36	14	0	15	5	copy fasta	MYT1L	chr2	1784113	2336275