Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARIH1_chr15_72469330_72607987	0/1	t0001	20013	24	3	7	9	1	3	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0002	20013	23	2	7	12	2	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0003	20007	14	0	0	14	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0004	20008	9	0	0	9	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0005	20011	8	0	0	8	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0006	20003	6	5	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0007	20008	5	5	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0008	20009	5	0	5	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0009	20013	5	0	4	0	1	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0010	20005	4	3	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0011	20000	4	4	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0012	20013	3	1	0	2	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0013	20006	3	3	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0014	20006	3	3	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0015	20007	3	2	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0016	20004	3	0	2	0	1	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0017	20012	3	3	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0018	20011	3	0	2	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0019	20010	2	2	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0020	20011	2	2	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0021	20002	2	0	0	0	2	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0022	20008	2	0	2	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0023	20013	2	2	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0024	19993	2	2	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0025	20007	2	0	0	2	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0026	20008	2	0	0	2	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0027	20012	2	2	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0028	20013	2	0	2	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0029	20013	2	0	0	2	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0030	20012	2	2	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0031	20012	2	0	0	1	1	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0032	20014	2	0	1	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0033	20015	2	1	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0034	20012	2	0	0	2	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0035	20007	1	0	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0036	20005	1	1	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0037	20011	1	1	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0038	20012	1	1	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0039	20010	1	1	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0040	20010	1	1	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0041	20011	1	1	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0042	20010	1	1	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0043	20012	1	0	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0044	20012	1	1	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0045	20012	1	0	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0046	20005	1	0	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0047	20009	1	1	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0048	20013	1	0	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0049	20003	1	1	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0050	20004	1	1	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987