JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYT1L_chr2_1784113_2336275	0/0	t0002	3583	17	8	0	6	1	2	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	t0003	3583	7	1	0	5	0	1	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	t0004	3584	6	2	1	0	1	2	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	t0005	3583	6	4	0	0	0	2	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	t0006	3583	3	1	0	2	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	t0007	3584	3	0	0	1	1	1	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	t0008	3583	2	1	0	1	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	t0009	3583	2	1	0	1	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	t0010	3584	2	2	0	0	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	t0011	3583	2	2	0	0	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	t0012	3584	2	2	0	0	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	t0013	3584	2	2	0	0	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	t0014	3583	1	0	1	0	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	t0015	3583	1	0	0	0	0	1	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	t0016	3583	1	0	0	0	0	1	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	t0017	3583	1	1	0	0	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	t0018	3583	1	1	0	0	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	t0019	3583	1	1	0	0	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	t0020	3583	1	1	0	0	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	t0021	3583	1	1	0	0	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	t0022	3571	1	1	0	0	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	t0023	3583	1	0	0	1	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	t0024	3583	1	1	0	0	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	t0025	3583	1	0	0	0	1	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	t0026	3583	1	1	0	0	0	0	copy fasta	MYT1L	chr2	1784113	2336275
MYT1L_chr2_1784113_2336275	0/0	t0027	3583	1	0	0	0	0	1	copy fasta	MYT1L	chr2	1784113	2336275
MYT1_chr20_64159452_64247253	0/1	t0001	2192	82	5	26	33	2	15	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	t0002	2192	34	19	8	0	1	6	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	t0003	2192	32	23	5	0	1	3	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	t0004	2192	11	1	3	4	1	2	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	t0005	2192	9	9	0	0	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	t0006	2197	8	5	3	0	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	t0007	2192	7	0	2	2	2	1	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	t0008	2192	5	5	0	0	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	t0009	2192	5	0	1	0	2	2	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	t0010	2192	4	3	0	0	1	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	t0011	2192	4	0	3	0	1	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	t0012	2192	3	0	0	3	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	t0013	2192	3	1	0	2	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	t0014	2192	2	2	0	0	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	t0015	2192	2	2	0	0	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	t0016	2192	2	0	1	0	0	1	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	t0017	2192	1	1	0	0	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	t0018	2192	1	0	0	0	0	1	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	t0019	2192	1	0	0	1	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	t0020	2192	1	1	0	0	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	t0021	2192	1	1	0	0	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	t0022	2192	1	1	0	0	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	t0023	2192	1	0	0	0	0	1	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	t0024	2192	1	1	0	0	0	0	copy fasta	MYT1	chr20	64159452	64247253