JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MYT1_chr20_64159452_64247253	0/0	t0025	2192	1	0	0	0	1	0	copy fasta	MYT1	chr20	64159452	64247253
MYT1_chr20_64159452_64247253	0/0	t0026	2192	1	0	0	1	0	0	copy fasta	MYT1	chr20	64159452	64247253
MYZAP_chr15_57586904_57690364	0/1	t0001	998	142	22	31	76	3	9	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	t0002	998	124	24	22	57	7	14	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	t0003	998	38	12	13	4	4	5	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	t0004	997	16	14	0	2	0	0	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	t0005	997	8	2	1	4	0	1	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	t0006	998	4	3	1	0	0	0	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	t0007	998	4	4	0	0	0	0	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	t0008	992	3	3	0	0	0	0	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	t0009	998	2	2	0	0	0	0	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	t0010	998	1	0	0	0	0	1	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	t0011	998	1	1	0	0	0	0	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	t0012	997	1	0	0	1	0	0	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	t0013	998	1	1	0	0	0	0	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	t0014	998	1	1	0	0	0	0	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	t0015	998	1	1	0	0	0	0	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	1/0	t0016	998	1	0	0	0	0	0	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	t0017	992	1	1	0	0	0	0	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	t0018	997	1	1	0	0	0	0	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	t0019	997	1	1	0	0	0	0	copy fasta	MYZAP	chr15	57586904	57690364
MYZAP_chr15_57586904_57690364	0/0	t0020	998	1	1	0	0	0	0	copy fasta	MYZAP	chr15	57586904	57690364
MZB1_chr5_139382467_139394913	1/1	t0001	356	322	76	62	134	14	34	copy fasta	MZB1	chr5	139382467	139394913
MZB1_chr5_139382467_139394913	0/0	t0002	356	15	9	2	1	0	3	copy fasta	MZB1	chr5	139382467	139394913
MZB1_chr5_139382467_139394913	0/0	t0003	357	10	1	0	9	0	0	copy fasta	MZB1	chr5	139382467	139394913
MZB1_chr5_139382467_139394913	0/0	t0004	353	6	0	0	6	0	0	copy fasta	MZB1	chr5	139382467	139394913
MZB1_chr5_139382467_139394913	0/0	t0005	357	1	0	0	0	0	1	copy fasta	MZB1	chr5	139382467	139394913
MZF1_chr19_58556932_58578335	1/1	t0001	462	412	90	74	194	14	38	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	t0002	462	1	0	0	0	1	0	copy fasta	MZF1	chr19	58556932	58578335
MZF1_chr19_58556932_58578335	0/0	t0003	462	1	0	0	0	1	0	copy fasta	MZF1	chr19	58556932	58578335
MZT1_chr13_72703367_72732629	0/1	t0001	1982	290	46	57	148	10	28	copy fasta	MZT1	chr13	72703367	72732629
MZT1_chr13_72703367_72732629	1/0	t0002	1983	42	31	1	5	1	3	copy fasta	MZT1	chr13	72703367	72732629
MZT1_chr13_72703367_72732629	0/0	t0003	1982	22	1	6	4	3	8	copy fasta	MZT1	chr13	72703367	72732629
MZT1_chr13_72703367_72732629	0/0	t0004	1983	7	7	0	0	0	0	copy fasta	MZT1	chr13	72703367	72732629
MZT1_chr13_72703367_72732629	0/0	t0005	1982	4	0	0	0	0	4	copy fasta	MZT1	chr13	72703367	72732629
MZT1_chr13_72703367_72732629	0/0	t0006	1982	3	3	0	0	0	0	copy fasta	MZT1	chr13	72703367	72732629
MZT1_chr13_72703367_72732629	0/0	t0007	1982	3	3	0	0	0	0	copy fasta	MZT1	chr13	72703367	72732629
MZT1_chr13_72703367_72732629	0/0	t0008	1983	2	0	0	2	0	0	copy fasta	MZT1	chr13	72703367	72732629
MZT1_chr13_72703367_72732629	0/0	t0009	1982	2	2	0	0	0	0	copy fasta	MZT1	chr13	72703367	72732629
MZT1_chr13_72703367_72732629	0/0	t0010	1982	2	0	1	0	0	1	copy fasta	MZT1	chr13	72703367	72732629
MZT1_chr13_72703367_72732629	0/0	t0011	1983	1	0	0	1	0	0	copy fasta	MZT1	chr13	72703367	72732629
MZT1_chr13_72703367_72732629	0/0	t0012	1983	1	1	0	0	0	0	copy fasta	MZT1	chr13	72703367	72732629
MZT1_chr13_72703367_72732629	0/0	t0013	1982	1	0	1	0	0	0	copy fasta	MZT1	chr13	72703367	72732629
MZT1_chr13_72703367_72732629	0/0	t0014	1983	1	1	0	0	0	0	copy fasta	MZT1	chr13	72703367	72732629
MZT1_chr13_72703367_72732629	0/0	t0015	1982	1	0	0	0	0	1	copy fasta	MZT1	chr13	72703367	72732629
MZT1_chr13_72703367_72732629	0/0	t0016	1982	1	0	0	0	0	1	copy fasta	MZT1	chr13	72703367	72732629
MZT1_chr13_72703367_72732629	0/0	t0017	1982	1	1	0	0	0	0	copy fasta	MZT1	chr13	72703367	72732629
MZT2A_chr2_131478960_131497397	1/1	t0001	123	389	91	76	156	14	50	copy fasta	MZT2A	chr2	131478960	131497397
MZT2A_chr2_131478960_131497397	0/0	t0002	123	1	1	0	0	0	0	copy fasta	MZT2A	chr2	131478960	131497397
MZT2B_chr2_130177262_130195727	1/1	t0001	123	391	84	73	166	18	48	copy fasta	MZT2B	chr2	130177262	130195727