JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MZT2B_chr2_130177262_130195727	0/0	t0002	123	17	14	3	0	0	0	copy fasta	MZT2B	chr2	130177262	130195727
N4BP1_chr16_48533726_48615180	0/0	t0001	4386	114	23	22	46	5	18	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	t0002	4387	86	2	12	66	2	4	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	1/1	t0003	4387	70	17	16	20	7	8	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	t0004	4386	9	9	0	0	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	t0005	4387	8	8	0	0	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	t0006	4386	5	4	1	0	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	t0007	4386	5	5	0	0	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	t0008	4387	4	0	4	0	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	t0009	4387	2	2	0	0	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	t0010	4387	2	2	0	0	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	t0011	4387	2	0	2	0	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	t0012	4386	2	0	0	2	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	t0013	4387	1	1	0	0	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	t0014	4387	1	1	0	0	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	t0015	4387	1	1	0	0	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	t0016	4387	1	0	0	0	0	1	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	t0017	4387	1	0	0	0	0	1	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	t0018	4387	1	0	1	0	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	t0019	4386	1	1	0	0	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	t0020	4386	1	1	0	0	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	t0021	4386	1	1	0	0	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	t0022	4386	1	1	0	0	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	t0023	4386	1	0	0	1	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	t0024	4386	1	1	0	0	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	t0025	4386	1	1	0	0	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	t0026	4386	1	1	0	0	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP1_chr16_48533726_48615180	0/0	t0027	4368	1	0	0	1	0	0	copy fasta	N4BP1	chr16	48533726	48615180
N4BP2L1_chr13_32395723_32433130	1/0	t0001	2268	192	18	40	99	5	29	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0002	2264	83	6	9	61	2	5	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0003	2264	50	12	17	8	4	9	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0004	2264	11	0	0	11	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0005	2265	8	8	0	0	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0006	2268	8	7	0	1	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0007	2264	7	0	0	7	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0008	2264	7	6	1	0	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0009	2264	7	0	0	7	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/1	t0010	2268	7	1	3	0	1	1	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0011	2268	6	6	0	0	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0012	2267	5	0	0	5	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0013	2264	4	4	0	0	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0014	2265	3	3	0	0	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0015	2264	3	3	0	0	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0016	2268	3	3	0	0	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0017	2265	2	2	0	0	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0018	2265	2	2	0	0	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0019	2265	2	2	0	0	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0020	2265	1	1	0	0	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0021	2268	1	1	0	0	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0022	2265	1	1	0	0	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130