JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
N4BP3_chr5_178108532_178131081	0/0	t0035	4351	1	0	0	1	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0036	4351	1	1	0	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0037	4351	1	0	0	1	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0038	4351	1	0	0	1	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0039	4351	1	0	0	1	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0040	4351	1	1	0	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0041	4351	1	1	0	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0042	4351	1	1	0	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0043	4340	1	0	0	1	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0044	4351	1	1	0	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0045	4351	1	1	0	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0046	4351	1	0	0	0	0	1	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0047	4351	1	0	0	0	0	1	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	1/0	t0048	4351	1	0	0	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0049	4351	1	1	0	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0050	4351	1	1	0	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0051	4338	1	1	0	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0052	4351	1	0	0	1	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0053	4351	1	1	0	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N6AMT1_chr21_28867191_28890367	0/0	t0001	4208	84	10	27	25	5	17	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0002	4217	71	1	18	50	0	2	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0003	4216	61	8	15	21	3	14	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0004	4208	55	18	5	30	0	2	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0005	4217	36	0	4	32	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0006	4208	13	13	0	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0007	4208	10	0	0	10	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0008	4217	10	8	2	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0009	4216	9	0	0	9	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0010	4208	9	0	0	9	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0011	4208	7	0	0	7	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0012	4217	6	6	0	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0013	4208	5	4	1	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0014	4217	5	4	1	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0015	4216	4	3	1	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0016	4208	4	2	0	0	1	1	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0017	4208	3	3	0	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0018	4208	3	3	0	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0019	4208	3	0	0	3	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0020	4217	2	2	0	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0021	4208	2	2	0	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0022	4208	2	0	0	2	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0023	4216	1	0	1	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0024	4216	1	0	0	0	1	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0025	4216	1	0	0	0	0	1	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0026	4216	1	0	1	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0027	4208	1	0	0	1	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0028	4217	1	1	0	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0029	4217	1	1	0	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0030	4208	1	1	0	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0031	4208	1	1	0	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367