JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
N6AMT1_chr21_28867191_28890367	0/0	t0032	4240	1	1	0	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0033	4208	1	1	0	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0034	4159	1	0	0	0	0	1	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0035	4208	1	0	0	1	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/1	t0036	4208	1	0	0	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0037	4208	1	0	0	1	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	1/0	t0038	4217	1	0	0	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0039	4217	1	0	0	1	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
N6AMT1_chr21_28867191_28890367	0/0	t0040	4217	1	1	0	0	0	0	copy fasta	N6AMT1	chr21	28867191	28890367
NAA10_chrX_153924225_153940037	1/1	t0001	896	164	68	30	48	7	9	copy fasta	NAA10	chrX	153924225	153940037
NAA10_chrX_153924225_153940037	0/0	t0002	896	120	7	18	76	0	19	copy fasta	NAA10	chrX	153924225	153940037
NAA10_chrX_153924225_153940037	0/0	t0003	896	2	1	1	0	0	0	copy fasta	NAA10	chrX	153924225	153940037
NAA10_chrX_153924225_153940037	0/0	t0004	901	1	0	0	1	0	0	copy fasta	NAA10	chrX	153924225	153940037
NAA10_chrX_153924225_153940037	0/0	t0005	903	1	0	0	1	0	0	copy fasta	NAA10	chrX	153924225	153940037
NAA10_chrX_153924225_153940037	0/0	t0006	892	1	0	0	1	0	0	copy fasta	NAA10	chrX	153924225	153940037
NAA10_chrX_153924225_153940037	0/0	t0007	894	1	0	0	1	0	0	copy fasta	NAA10	chrX	153924225	153940037
NAA10_chrX_153924225_153940037	0/0	t0008	897	1	0	0	1	0	0	copy fasta	NAA10	chrX	153924225	153940037
NAA10_chrX_153924225_153940037	0/0	t0009	895	1	0	1	0	0	0	copy fasta	NAA10	chrX	153924225	153940037
NAA11_chr4_79311647_79331061	0/1	t0001	1342	205	23	25	138	4	14	copy fasta	NAA11	chr4	79311647	79331061
NAA11_chr4_79311647_79331061	1/0	t0002	1342	127	40	34	27	10	15	copy fasta	NAA11	chr4	79311647	79331061
NAA11_chr4_79311647_79331061	0/0	t0003	1341	49	16	4	23	2	4	copy fasta	NAA11	chr4	79311647	79331061
NAA11_chr4_79311647_79331061	0/0	t0004	1342	8	6	0	0	0	2	copy fasta	NAA11	chr4	79311647	79331061
NAA11_chr4_79311647_79331061	0/0	t0005	1342	4	4	0	0	0	0	copy fasta	NAA11	chr4	79311647	79331061
NAA11_chr4_79311647_79331061	0/0	t0006	1342	1	1	0	0	0	0	copy fasta	NAA11	chr4	79311647	79331061
NAA11_chr4_79311647_79331061	0/0	t0007	1342	1	0	1	0	0	0	copy fasta	NAA11	chr4	79311647	79331061
NAA11_chr4_79311647_79331061	0/0	t0008	1342	1	0	0	1	0	0	copy fasta	NAA11	chr4	79311647	79331061
NAA11_chr4_79311647_79331061	0/0	t0009	1342	1	0	0	0	0	1	copy fasta	NAA11	chr4	79311647	79331061
NAA11_chr4_79311647_79331061	0/0	t0010	1342	1	0	0	1	0	0	copy fasta	NAA11	chr4	79311647	79331061
NAA15_chr4_139296505_139396384	0/0	t0001	3575	91	3	15	60	2	11	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	1/0	t0002	3574	63	8	23	18	3	10	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/1	t0003	3574	56	7	5	31	4	8	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0004	3575	17	3	3	11	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0005	3573	16	13	1	0	1	1	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0006	3575	15	13	2	0	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0007	3573	13	10	2	1	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0008	3574	12	10	2	0	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0009	3576	12	2	1	6	2	1	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0010	3575	9	1	2	4	0	2	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0011	3574	3	1	0	1	0	1	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0012	3574	3	0	0	3	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0013	3574	2	0	0	2	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0014	3574	2	2	0	0	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0015	3574	2	0	0	0	2	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0016	3573	1	1	0	0	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0017	3573	1	1	0	0	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0018	3574	1	0	0	1	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0019	3574	1	0	0	0	0	1	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0020	3574	1	0	0	1	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0021	3574	1	1	0	0	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0022	3574	1	1	0	0	0	0	copy fasta	NAA15	chr4	139296505	139396384