JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NAA15_chr4_139296505_139396384	0/0	t0023	3574	1	0	1	0	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0024	3575	1	0	1	0	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0025	3575	1	0	0	1	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0026	3575	1	0	0	0	0	1	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0027	3575	1	1	0	0	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0028	3576	1	1	0	0	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0029	3573	1	0	0	1	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0030	3574	1	0	0	1	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0031	3576	1	0	0	1	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0032	3574	1	0	0	1	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA15_chr4_139296505_139396384	0/0	t0033	3575	1	1	0	0	0	0	copy fasta	NAA15	chr4	139296505	139396384
NAA16_chr13_41306267_41382030	0/0	t0001	1691	91	10	26	43	2	10	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	t0002	1691	70	10	9	35	5	11	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	t0003	1691	55	1	12	38	2	2	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	t0004	1691	47	7	5	27	1	7	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	t0005	1691	17	15	2	0	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	t0006	1691	14	11	3	0	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	t0007	1691	12	0	0	12	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	t0008	1691	11	10	1	0	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	t0009	1691	9	5	3	0	0	1	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	t0010	1691	5	5	0	0	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	t0011	1691	4	0	0	4	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	t0012	1694	3	0	0	3	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	t0013	1691	3	0	2	0	1	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	t0014	1691	1	1	0	0	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	t0015	1691	1	1	0	0	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	t0016	1691	1	0	0	1	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	t0017	1691	1	1	0	0	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	t0018	1691	1	0	0	0	1	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	t0019	1691	1	0	0	1	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	t0020	1691	1	1	0	0	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	t0021	1691	1	1	0	0	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	t0022	1691	1	0	1	0	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	t0023	1691	1	0	0	1	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	t0024	1691	1	1	0	0	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	t0025	1691	1	0	0	1	0	0	copy fasta	NAA16	chr13	41306267	41382030
NAA16_chr13_41306267_41382030	0/0	t0026	1691	1	0	0	0	0	1	copy fasta	NAA16	chr13	41306267	41382030
NAA20_chr20_20012362_20038655	1/1	t0001	504	423	85	67	209	14	46	copy fasta	NAA20	chr20	20012362	20038655
NAA20_chr20_20012362_20038655	0/0	t0002	504	5	3	2	0	0	0	copy fasta	NAA20	chr20	20012362	20038655
NAA20_chr20_20012362_20038655	0/0	t0003	504	3	0	3	0	0	0	copy fasta	NAA20	chr20	20012362	20038655
NAA20_chr20_20012362_20038655	0/0	t0004	504	3	3	0	0	0	0	copy fasta	NAA20	chr20	20012362	20038655
NAA20_chr20_20012362_20038655	0/0	t0005	504	1	0	0	1	0	0	copy fasta	NAA20	chr20	20012362	20038655
NAA20_chr20_20012362_20038655	0/0	t0006	504	1	1	0	0	0	0	copy fasta	NAA20	chr20	20012362	20038655
NAA20_chr20_20012362_20038655	0/0	t0007	504	1	1	0	0	0	0	copy fasta	NAA20	chr20	20012362	20038655
NAA20_chr20_20012362_20038655	0/0	t0008	504	1	1	0	0	0	0	copy fasta	NAA20	chr20	20012362	20038655
NAA25_chr12_112021689_112113783	1/0	t0001	2853	99	30	32	19	3	14	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	t0002	2853	85	7	14	62	0	2	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	t0003	2853	68	23	3	36	1	5	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/1	t0004	2853	41	5	4	16	2	13	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	t0005	2853	14	8	0	5	0	1	copy fasta	NAA25	chr12	112021689	112113783