Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
ARIH1_chr15_72469330_72607987	0/0	t0051	20009	1	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0052	20009	1	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0053	20010	1	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0054	20011	1	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	1/0	t0055	20006	1	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0056	20007	1	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0057	20008	1	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0058	20007	1	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0059	20008	1	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0060	20007	1	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0061	20008	1	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0062	20005	1	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0063	20006	1	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0064	20007	1	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0065	20007	1	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0066	20014	1	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0067	20007	1	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0068	20011	1	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0069	20007	1	0	0	0	1	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0070	20006	1	0	0	0	1	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0071	20001	1	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0072	20001	1	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0073	19999	1	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0074	19999	1	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0075	20004	1	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0076	20000	1	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0077	20012	1	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0078	20013	1	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0079	19993	1	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0080	20013	1	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0081	20013	1	0	0	1	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0082	20007	1	0	0	1	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0083	20006	1	0	0	1	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0084	20007	1	0	0	1	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0085	20008	1	0	0	0	1	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0086	20008	1	0	0	1	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0087	20009	1	0	0	1	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0088	20007	1	0	0	1	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0089	20007	1	0	0	1	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0090	20010	1	0	0	1	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0091	20011	1	0	0	1	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0092	20013	1	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0093	20009	1	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0094	20012	1	0	0	0	1	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0095	20013	1	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0096	20006	1	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0097	20014	1	0	0	1	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0098	20014	1	0	0	0	1	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0099	20014	1	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0100	19993	1	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987