JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NAA25_chr12_112021689_112113783	0/0	t0006	2853	5	4	1	0	0	0	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	t0007	2853	5	4	1	0	0	0	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	t0008	2853	4	4	0	0	0	0	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	t0009	2853	4	0	0	4	0	0	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	t0010	2852	3	3	0	0	0	0	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	t0011	2853	2	0	0	2	0	0	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	t0012	2853	2	0	1	0	0	1	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	t0013	2853	2	0	0	2	0	0	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	t0014	2853	1	0	0	0	0	1	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	t0015	2853	1	1	0	0	0	0	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	t0016	2853	1	1	0	0	0	0	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	t0017	2853	1	0	0	1	0	0	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	t0018	2853	1	0	0	0	0	1	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	t0019	2853	1	1	0	0	0	0	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	t0020	2853	1	0	0	1	0	0	copy fasta	NAA25	chr12	112021689	112113783
NAA25_chr12_112021689_112113783	0/0	t0021	2853	1	1	0	0	0	0	copy fasta	NAA25	chr12	112021689	112113783
NAA30_chr14_57385586_57420906	0/1	t0001	6494	111	7	24	60	3	16	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	1/0	t0002	6511	43	30	5	1	0	6	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0003	6511	27	5	2	19	0	1	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0004	6511	9	0	0	9	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0005	6510	9	8	1	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0006	6511	7	7	0	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0007	6511	5	3	2	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0008	6493	4	0	3	1	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0009	6511	4	3	1	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0010	6512	3	3	0	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0011	6511	2	2	0	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0012	6493	2	0	2	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0013	6494	2	0	2	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0014	6494	2	0	0	0	0	2	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0015	6511	2	2	0	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0016	6511	2	0	2	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0017	6510	2	2	0	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0018	6511	2	1	1	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0019	6511	1	1	0	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0020	6493	1	0	1	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0021	6494	1	0	0	0	0	1	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0022	6494	1	0	1	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0023	6494	1	0	1	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0024	6494	1	0	0	0	1	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0025	6494	1	1	0	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0026	6494	1	0	0	1	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0027	6495	1	1	0	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0028	6511	1	1	0	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0029	6511	1	1	0	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0030	6511	1	1	0	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0031	6494	1	0	0	1	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0032	6511	1	1	0	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0033	6510	1	1	0	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0034	6510	1	1	0	0	0	0	copy fasta	NAA30	chr14	57385586	57420906