JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NAA30_chr14_57385586_57420906	0/0	t0035	6505	1	1	0	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA30_chr14_57385586_57420906	0/0	t0036	6512	1	1	0	0	0	0	copy fasta	NAA30	chr14	57385586	57420906
NAA35_chr9_85936146_86030462	1/0	t0001	3636	127	25	17	66	5	13	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	t0002	3636	65	5	5	52	0	3	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/1	t0003	3636	43	19	12	4	1	6	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	t0004	3636	26	25	1	0	0	0	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	t0005	3636	5	0	4	0	1	0	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	t0006	3636	4	0	2	0	1	1	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	t0007	3636	3	3	0	0	0	0	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	t0008	3636	1	0	1	0	0	0	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	t0009	3636	1	0	0	1	0	0	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	t0010	3636	1	0	0	0	0	1	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	t0011	3636	1	1	0	0	0	0	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	t0012	3636	1	0	0	1	0	0	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	t0013	3636	1	1	0	0	0	0	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	t0014	3636	1	1	0	0	0	0	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	t0015	3636	1	1	0	0	0	0	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	t0016	3636	1	0	1	0	0	0	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	t0017	3636	1	0	0	0	0	1	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	t0018	3636	1	0	0	1	0	0	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	t0019	3636	1	0	0	1	0	0	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	t0020	3636	1	0	0	0	0	1	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	t0021	3636	1	0	1	0	0	0	copy fasta	NAA35	chr9	85936146	86030462
NAA35_chr9_85936146_86030462	0/0	t0022	3636	1	1	0	0	0	0	copy fasta	NAA35	chr9	85936146	86030462
NAA38_chr17_7851685_7862559	1/1	t0001	143	420	90	78	184	18	48	copy fasta	NAA38	chr17	7851685	7862559
NAA38_chr17_7851685_7862559	0/0	t0002	143	1	1	0	0	0	0	copy fasta	NAA38	chr17	7851685	7862559
NAA38_chr17_7851685_7862559	0/0	t0003	143	1	1	0	0	0	0	copy fasta	NAA38	chr17	7851685	7862559
NAA40_chr11_63934002_63962319	0/0	t0001	2934	55	2	15	27	4	7	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0002	2935	28	5	9	10	1	3	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0003	2935	21	5	3	11	1	1	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/1	t0004	2926	16	2	7	0	2	4	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0005	2934	15	0	3	7	2	3	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0006	2926	10	0	1	8	0	1	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0007	2926	9	1	4	0	1	3	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0008	2934	7	1	0	4	1	1	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0009	2931	7	7	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0010	2932	6	6	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0011	2934	6	0	0	6	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0012	2936	6	3	0	2	0	1	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0013	2936	5	5	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0014	2935	5	1	1	0	0	3	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0015	2935	5	4	1	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0016	2931	5	5	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0017	2926	5	0	0	1	0	4	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0018	2931	4	0	2	0	0	2	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0019	2936	4	4	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0020	2937	4	4	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0021	2934	4	0	0	3	0	1	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0022	2936	3	0	0	3	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0023	2936	3	3	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319