JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NAA40_chr11_63934002_63962319	0/0	t0024	2933	3	2	0	1	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0025	2934	3	0	0	3	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	1/0	t0026	2936	3	2	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0027	2937	2	2	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0028	2936	2	1	0	1	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0029	2937	2	2	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0030	2951	2	2	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0031	2947	2	2	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0032	2926	2	0	0	2	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0033	2935	2	0	1	1	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0034	2936	2	0	0	0	0	2	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0035	2936	2	2	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0036	2931	1	0	0	1	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0037	2936	1	0	0	1	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0038	2936	1	0	0	1	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0039	2936	1	1	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0040	2934	1	0	0	0	1	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0041	2935	1	1	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0042	2935	1	1	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0043	2936	1	1	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0044	2933	1	0	0	1	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0045	2932	1	1	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0046	2935	1	0	1	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0047	2935	1	0	0	1	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0048	2936	1	1	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0049	2936	1	1	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0050	2936	1	0	0	1	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0051	2947	1	1	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0052	2934	1	0	0	1	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0053	2934	1	0	0	1	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0054	2936	1	0	0	1	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0055	2927	1	0	1	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0056	2936	1	0	1	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0057	2937	1	1	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0058	2926	1	0	1	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0059	2935	1	0	0	1	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0060	2935	1	1	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0061	2935	1	1	0	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0062	2936	1	0	0	1	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0063	2931	1	0	1	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0064	2926	1	0	0	0	1	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0065	2935	1	0	0	1	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0066	2926	1	0	0	1	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0067	2936	1	0	0	0	0	1	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0068	2926	1	0	0	0	0	1	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0069	2935	1	0	1	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0070	2927	1	0	0	0	1	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0071	2927	1	0	0	0	1	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0072	2927	1	0	1	0	0	0	copy fasta	NAA40	chr11	63934002	63962319
NAA40_chr11_63934002_63962319	0/0	t0073	2935	1	0	0	1	0	0	copy fasta	NAA40	chr11	63934002	63962319