JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NAA50_chr3_113711458_113751249	1/1	t0001	5603	214	27	39	112	7	27	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0002	5603	89	12	10	54	6	7	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0003	5603	11	0	0	7	0	4	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0004	5603	7	1	6	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0005	5601	7	5	2	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0006	5603	6	6	0	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0007	5603	5	5	0	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0008	5603	4	0	4	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0009	5603	4	4	0	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0010	5603	3	3	0	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0011	5603	3	3	0	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0012	5601	3	3	0	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0013	5603	2	2	0	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0014	5603	2	2	0	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0015	5603	2	2	0	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0016	5603	2	0	2	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0017	5603	2	1	0	0	1	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0018	5603	2	0	0	2	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0019	5603	2	0	0	2	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0020	5603	1	0	1	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0021	5603	1	1	0	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0022	5603	1	1	0	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0023	5603	1	0	0	1	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0024	5603	1	0	0	0	0	1	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0025	5603	1	0	0	1	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0026	5603	1	1	0	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0027	5603	1	0	1	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0028	5603	1	1	0	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0029	5603	1	0	1	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0030	5603	1	0	0	1	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0031	5603	1	0	1	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0032	5603	1	1	0	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0033	5603	1	1	0	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0034	5603	1	0	0	1	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0035	5603	1	0	0	1	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0036	5603	1	0	0	1	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0037	5603	1	1	0	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0038	5603	1	0	0	1	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0039	5603	1	1	0	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0040	5603	1	0	0	1	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0041	5603	1	0	0	1	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0042	5603	1	1	0	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0043	5601	1	1	0	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0044	5603	1	0	1	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0045	5603	1	0	0	0	0	1	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0046	5603	1	1	0	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0047	5603	1	0	0	1	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0048	5603	1	1	0	0	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA50_chr3_113711458_113751249	0/0	t0049	5603	1	0	0	1	0	0	copy fasta	NAA50	chr3	113711458	113751249
NAA60_chr16_3438680_3491953	0/1	t0001	1928	161	25	42	70	7	16	copy fasta	NAA60	chr16	3438680	3491953