JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NAA60_chr16_3438680_3491953	0/0	t0002	1928	51	0	6	35	0	10	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0003	1928	25	10	0	11	1	3	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	1/0	t0004	1928	20	2	9	6	1	1	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0005	1928	20	6	2	12	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0006	1928	17	11	3	0	0	3	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0007	1927	15	0	6	6	2	1	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0008	1928	15	14	1	0	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0009	1928	5	0	0	5	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0010	1928	4	4	0	0	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0011	1928	3	3	0	0	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0012	1928	3	0	0	3	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0013	1928	3	1	1	0	1	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0014	1927	3	0	0	3	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0015	1928	3	3	0	0	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0016	1928	2	0	0	0	0	2	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0017	1928	2	0	0	1	0	1	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0018	1928	2	2	0	0	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0019	1927	2	2	0	0	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0020	1928	2	2	0	0	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0021	1928	1	1	0	0	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0022	1928	1	0	0	1	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0023	1928	1	0	0	0	0	1	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0024	1928	1	1	0	0	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0025	1928	1	0	1	0	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0026	1928	1	1	0	0	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0027	1928	1	0	0	1	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0028	1928	1	1	0	0	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0029	1927	1	1	0	0	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0030	1928	1	0	0	0	0	1	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0031	1928	1	1	0	0	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0032	1928	1	0	0	1	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0033	1928	1	0	0	0	0	1	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0034	1928	1	0	0	1	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0035	1928	1	0	1	0	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0036	1928	1	1	0	0	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0037	1928	1	1	0	0	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA60_chr16_3438680_3491953	0/0	t0038	1928	1	1	0	0	0	0	copy fasta	NAA60	chr16	3438680	3491953
NAA80_chr3_50291402_50304405	1/1	t0001	604	256	60	54	87	14	39	copy fasta	NAA80	chr3	50291402	50304405
NAA80_chr3_50291402_50304405	0/0	t0002	604	97	3	14	79	0	1	copy fasta	NAA80	chr3	50291402	50304405
NAA80_chr3_50291402_50304405	0/0	t0003	604	15	13	2	0	0	0	copy fasta	NAA80	chr3	50291402	50304405
NAA80_chr3_50291402_50304405	0/0	t0004	604	4	4	0	0	0	0	copy fasta	NAA80	chr3	50291402	50304405
NAA80_chr3_50291402_50304405	0/0	t0005	605	3	3	0	0	0	0	copy fasta	NAA80	chr3	50291402	50304405
NAA80_chr3_50291402_50304405	0/0	t0006	604	1	1	0	0	0	0	copy fasta	NAA80	chr3	50291402	50304405
NAA80_chr3_50291402_50304405	0/0	t0007	604	1	0	0	1	0	0	copy fasta	NAA80	chr3	50291402	50304405
NAA80_chr3_50291402_50304405	0/0	t0008	604	1	0	0	1	0	0	copy fasta	NAA80	chr3	50291402	50304405
NAAA_chr4_75908660_75946013	1/1	t0001	780	358	61	66	181	14	34	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	t0002	780	16	13	0	1	0	2	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	t0003	780	10	9	1	0	0	0	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	t0004	780	7	7	0	0	0	0	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	t0005	780	2	0	0	0	0	2	copy fasta	NAAA	chr4	75908660	75946013