JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NAAA_chr4_75908660_75946013	0/0	t0006	780	2	0	0	2	0	0	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	t0007	780	2	0	2	0	0	0	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	t0008	780	1	0	1	0	0	0	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	t0009	780	1	1	0	0	0	0	copy fasta	NAAA	chr4	75908660	75946013
NAAA_chr4_75908660_75946013	0/0	t0010	780	1	1	0	0	0	0	copy fasta	NAAA	chr4	75908660	75946013
NAALAD2_chr11_90129663_90197894	0/0	t0001	1244	114	21	20	51	3	19	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	1/1	t0002	1244	74	21	18	24	3	6	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	t0003	1244	45	2	3	34	0	6	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	t0004	1244	41	27	2	10	0	2	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	t0005	1244	38	13	5	12	3	5	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	t0006	1244	21	0	9	3	3	6	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	t0007	1244	9	1	0	6	0	2	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	t0008	1244	7	1	1	4	0	1	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	t0009	1244	5	0	0	5	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	t0010	1244	2	2	0	0	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	t0011	1244	1	1	0	0	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	t0012	1244	1	0	0	1	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	t0013	1244	1	0	0	1	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	t0014	1244	1	1	0	0	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	t0015	1244	1	0	0	1	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	t0016	1244	1	0	1	0	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	t0017	1216	1	0	1	0	0	0	copy fasta	NAALAD2	chr11	90129663	90197894
NAALAD2_chr11_90129663_90197894	0/0	t0018	1244	1	0	0	0	0	1	copy fasta	NAALAD2	chr11	90129663	90197894
NAALADL1_chr11_65039818_65063553	1/1	t0001	486	371	97	60	158	18	36	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL1_chr11_65039818_65063553	0/0	t0002	486	1	1	0	0	0	0	copy fasta	NAALADL1	chr11	65039818	65063553
NAALADL2_chr3_174854334_175815548	0/0	t0001	7420	8	6	2	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0002	7419	7	3	4	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0003	7403	5	4	1	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0004	7416	4	4	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0005	7421	2	2	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0006	7413	2	1	1	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0007	7419	2	2	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0008	7401	2	1	1	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0009	7403	2	0	2	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0010	7402	2	1	1	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0011	7421	1	0	1	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0012	7420	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0013	7420	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0014	7419	1	0	1	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0015	7419	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0016	7421	1	0	1	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0017	7418	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0018	7419	1	0	1	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0019	7421	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0020	7408	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0021	7407	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0022	7408	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0023	7412	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0024	7416	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0025	7416	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548