JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NAALADL2_chr3_174854334_175815548	0/0	t0026	7418	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0027	7419	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0028	7408	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0029	7403	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0030	7401	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0031	7420	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0032	7412	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0033	7407	1	0	1	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0034	7400	1	0	1	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0035	7400	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0036	7403	1	0	1	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0037	7401	1	1	0	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAALADL2_chr3_174854334_175815548	0/0	t0038	7403	1	0	1	0	0	0	copy fasta	NAALADL2	chr3	174854334	175815548
NAB1_chr2_190644083_190697766	1/0	t0001	3045	87	28	10	37	4	7	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/1	t0002	3039	86	8	20	52	0	5	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0003	3044	49	1	11	20	7	10	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0004	3045	39	13	11	8	0	7	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0005	3045	27	0	3	23	0	1	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0006	3045	16	8	4	1	0	3	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0007	3039	15	14	1	0	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0008	3048	11	4	0	4	1	2	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0009	3045	7	0	1	5	0	1	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0010	3045	3	1	0	0	2	0	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0011	3045	3	0	0	3	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0012	3044	3	0	0	0	0	3	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0013	3045	3	3	0	0	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0014	3044	2	0	0	0	0	2	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0015	3045	2	0	0	2	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0016	3045	2	0	0	2	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0017	3047	2	0	0	2	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0018	3045	2	2	0	0	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0019	3044	1	0	0	1	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0020	3048	1	0	0	1	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0021	3042	1	0	0	1	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0022	3039	1	0	0	0	0	1	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0023	3041	1	0	0	1	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0024	3045	1	1	0	0	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0025	3045	1	0	0	1	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0026	3045	1	1	0	0	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0027	3039	1	0	0	1	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0028	3045	1	1	0	0	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0029	3066	1	0	0	1	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0030	3045	1	0	0	1	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0031	3045	1	0	0	1	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0032	3045	1	1	0	0	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB1_chr2_190644083_190697766	0/0	t0033	3039	1	0	1	0	0	0	copy fasta	NAB1	chr2	190644083	190697766
NAB2_chr12_57084114_57100476	1/1	t0001	914	386	94	81	151	18	40	copy fasta	NAB2	chr12	57084114	57100476
NAB2_chr12_57084114_57100476	0/0	t0002	914	6	0	0	6	0	0	copy fasta	NAB2	chr12	57084114	57100476
NAB2_chr12_57084114_57100476	0/0	t0003	914	2	0	0	2	0	0	copy fasta	NAB2	chr12	57084114	57100476
NAB2_chr12_57084114_57100476	0/0	t0004	914	1	0	1	0	0	0	copy fasta	NAB2	chr12	57084114	57100476