JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NAB2_chr12_57084114_57100476	0/0	t0005	914	1	0	0	1	0	0	copy fasta	NAB2	chr12	57084114	57100476
NABP1_chr2_191673136_191691943	1/0	t0001	1655	138	47	11	67	4	8	copy fasta	NABP1	chr2	191673136	191691943
NABP1_chr2_191673136_191691943	0/0	t0002	1655	129	6	32	66	5	20	copy fasta	NABP1	chr2	191673136	191691943
NABP1_chr2_191673136_191691943	0/1	t0003	1655	26	5	12	7	0	1	copy fasta	NABP1	chr2	191673136	191691943
NABP1_chr2_191673136_191691943	0/0	t0004	1656	26	8	8	8	0	2	copy fasta	NABP1	chr2	191673136	191691943
NABP1_chr2_191673136_191691943	0/0	t0005	1654	21	20	0	1	0	0	copy fasta	NABP1	chr2	191673136	191691943
NABP1_chr2_191673136_191691943	0/0	t0006	1656	11	1	0	7	0	3	copy fasta	NABP1	chr2	191673136	191691943
NABP1_chr2_191673136_191691943	0/0	t0007	1656	7	1	1	5	0	0	copy fasta	NABP1	chr2	191673136	191691943
NABP1_chr2_191673136_191691943	0/0	t0008	1656	7	0	3	3	0	1	copy fasta	NABP1	chr2	191673136	191691943
NABP1_chr2_191673136_191691943	0/0	t0009	1655	5	0	0	5	0	0	copy fasta	NABP1	chr2	191673136	191691943
NABP1_chr2_191673136_191691943	0/0	t0010	1655	4	0	0	4	0	0	copy fasta	NABP1	chr2	191673136	191691943
NABP1_chr2_191673136_191691943	0/0	t0011	1656	3	0	1	2	0	0	copy fasta	NABP1	chr2	191673136	191691943
NABP1_chr2_191673136_191691943	0/0	t0012	1655	2	0	0	2	0	0	copy fasta	NABP1	chr2	191673136	191691943
NABP1_chr2_191673136_191691943	0/0	t0013	1654	2	0	0	0	0	2	copy fasta	NABP1	chr2	191673136	191691943
NABP1_chr2_191673136_191691943	0/0	t0014	1655	2	0	0	0	0	2	copy fasta	NABP1	chr2	191673136	191691943
NABP1_chr2_191673136_191691943	0/0	t0015	1655	2	2	0	0	0	0	copy fasta	NABP1	chr2	191673136	191691943
NABP1_chr2_191673136_191691943	0/0	t0016	1655	1	0	0	1	0	0	copy fasta	NABP1	chr2	191673136	191691943
NABP1_chr2_191673136_191691943	0/0	t0017	1654	1	1	0	0	0	0	copy fasta	NABP1	chr2	191673136	191691943
NABP1_chr2_191673136_191691943	0/0	t0018	1655	1	1	0	0	0	0	copy fasta	NABP1	chr2	191673136	191691943
NABP1_chr2_191673136_191691943	0/0	t0019	1655	1	0	0	1	0	0	copy fasta	NABP1	chr2	191673136	191691943
NABP1_chr2_191673136_191691943	0/0	t0020	1655	1	0	0	0	0	1	copy fasta	NABP1	chr2	191673136	191691943
NABP1_chr2_191673136_191691943	0/0	t0021	1655	1	1	0	0	0	0	copy fasta	NABP1	chr2	191673136	191691943
NABP1_chr2_191673136_191691943	0/0	t0022	1655	1	0	0	1	0	0	copy fasta	NABP1	chr2	191673136	191691943
NABP1_chr2_191673136_191691943	0/0	t0023	1655	1	0	0	0	1	0	copy fasta	NABP1	chr2	191673136	191691943
NABP1_chr2_191673136_191691943	0/0	t0024	1656	1	1	0	0	0	0	copy fasta	NABP1	chr2	191673136	191691943
NABP2_chr12_56219342_56234854	0/1	t0001	757	283	21	67	145	13	36	copy fasta	NABP2	chr12	56219342	56234854
NABP2_chr12_56219342_56234854	1/0	t0002	765	113	73	7	26	3	3	copy fasta	NABP2	chr12	56219342	56234854
NABP2_chr12_56219342_56234854	0/0	t0003	765	15	0	4	9	2	0	copy fasta	NABP2	chr12	56219342	56234854
NABP2_chr12_56219342_56234854	0/0	t0004	757	1	0	0	0	0	1	copy fasta	NABP2	chr12	56219342	56234854
NACA2_chr17_61585421_61596219	1/1	t0001	152	399	95	80	160	16	46	copy fasta	NACA2	chr17	61585421	61596219
NACA2_chr17_61585421_61596219	0/0	t0002	152	1	1	0	0	0	0	copy fasta	NACA2	chr17	61585421	61596219
NACAD_chr7_45075437_45093969	1/1	t0001	148	404	91	78	173	14	46	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	t0002	148	5	5	0	0	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACAD_chr7_45075437_45093969	0/0	t0003	148	1	0	0	1	0	0	copy fasta	NACAD	chr7	45075437	45093969
NACA_chr12_56707427_56730299	1/1	t0001	151	366	92	68	154	14	36	copy fasta	NACA	chr12	56707427	56730299
NACC1_chr19_13113264_13146147	0/0	t0001	2944	141	18	29	75	4	15	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	t0002	2944	49	12	11	13	1	12	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	t0003	2945	45	12	12	10	6	5	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	t0004	2944	21	19	2	0	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	1/0	t0005	2941	17	1	6	7	0	2	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	t0006	2944	12	11	1	0	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/1	t0007	2944	5	3	0	1	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	t0008	2944	5	0	0	0	0	5	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	t0009	2944	4	4	0	0	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	t0010	2944	4	0	0	4	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	t0011	2944	3	3	0	0	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	t0012	2945	2	1	0	1	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	t0013	2945	2	0	0	2	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	t0014	2944	2	0	2	0	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	t0015	2944	1	0	0	0	0	1	copy fasta	NACC1	chr19	13113264	13146147