JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NACC1_chr19_13113264_13146147	0/0	t0016	2944	1	1	0	0	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	t0017	2944	1	1	0	0	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	t0018	2944	1	1	0	0	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	t0019	2944	1	1	0	0	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	t0020	2944	1	0	1	0	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	t0021	2944	1	1	0	0	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	t0022	2945	1	1	0	0	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	t0023	2944	1	0	0	0	1	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	t0024	2944	1	0	0	1	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	t0025	2945	1	1	0	0	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	t0026	2945	1	1	0	0	0	0	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	t0027	2944	1	0	0	0	0	1	copy fasta	NACC1	chr19	13113264	13146147
NACC1_chr19_13113264_13146147	0/0	t0028	2944	1	0	0	0	0	1	copy fasta	NACC1	chr19	13113264	13146147
NACC2_chr9_136001537_136100289	0/0	t0001	5132	42	0	9	23	2	8	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0002	5140	34	4	12	15	1	2	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0003	5149	32	5	11	11	2	3	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0004	5150	23	4	3	13	1	2	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0005	5155	21	6	3	10	2	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0006	5141	12	11	1	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0007	5155	11	0	5	0	0	6	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0008	5128	9	0	0	9	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0009	5140	8	5	0	1	0	2	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0010	5153	6	6	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0011	5151	5	2	3	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0012	5140	5	0	1	3	0	1	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0013	5138	5	0	0	5	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0014	5147	5	4	1	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0015	5149	4	0	1	0	0	3	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0016	5131	4	2	1	0	0	1	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	1/0	t0017	5140	4	0	0	1	0	2	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0018	5140	3	3	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0019	5150	3	0	0	0	2	1	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0020	5151	3	2	1	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0021	5132	3	0	0	3	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0022	5150	2	0	0	0	2	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0023	5146	2	1	1	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0024	5140	2	2	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0025	5138	2	2	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0026	5154	2	2	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0027	5140	2	2	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0028	5149	2	2	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0029	5150	2	0	0	2	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0030	5150	2	0	0	2	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0031	5132	2	0	0	1	0	1	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0032	5136	2	0	0	2	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0033	5148	2	0	0	2	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0034	5150	2	0	0	2	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0035	5156	2	0	1	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0036	5155	2	0	2	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0037	5151	2	2	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289