JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NACC2_chr9_136001537_136100289	0/0	t0038	5145	2	2	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0039	5155	2	0	0	2	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0040	5152	2	0	1	0	0	1	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0041	5150	2	0	1	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0042	5156	2	0	0	1	0	1	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0043	5148	2	0	0	0	2	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0044	5152	2	2	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0045	5148	2	2	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0046	5152	2	2	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0047	5131	1	0	0	0	1	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0048	5132	1	0	0	0	0	1	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0049	5152	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0050	5138	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0051	5152	1	0	1	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0052	5152	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0053	5148	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0054	5149	1	0	0	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0055	5141	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0056	5149	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0057	5139	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0058	5139	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0059	5149	1	0	1	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0060	5139	1	0	0	0	0	1	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0061	5149	1	0	0	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0062	5149	1	0	1	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/1	t0063	5149	1	0	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0064	5149	1	0	0	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0065	5151	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0066	5150	1	0	0	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0067	5138	1	0	0	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0068	5140	1	0	0	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0069	5140	1	0	1	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0070	5140	1	0	1	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0071	5146	1	0	0	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0072	5150	1	0	0	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0073	5150	1	0	0	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0074	5130	1	0	1	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0075	5132	1	0	0	0	0	1	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0076	5140	1	0	0	0	0	1	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0077	5140	1	0	0	0	0	1	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0078	5156	1	0	0	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0079	5152	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0080	5146	1	0	0	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0081	5137	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0082	5135	1	0	0	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0083	5139	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0084	5139	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0085	5150	1	0	0	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0086	5149	1	0	0	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0087	5139	1	0	0	0	1	0	copy fasta	NACC2	chr9	136001537	136100289