Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARIH1_chr15_72469330_72607987	0/0	t0101	20013	1	0	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0102	20014	1	0	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0103	20014	1	0	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0104	20008	1	0	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0105	20013	1	0	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0106	20013	1	0	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0107	20014	1	0	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0108	20015	1	0	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0109	20014	1	0	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0110	20014	1	0	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0111	20014	1	0	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0112	20014	1	0	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0113	19991	1	1	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0114	20013	1	0	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0115	20013	1	0	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0116	20013	1	0	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0117	20010	1	0	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0118	20007	1	0	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0119	20012	1	0	0	0	0	1	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0120	20013	1	0	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0121	20015	1	0	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0122	20013	1	0	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0123	20013	1	0	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0124	20013	1	0	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0125	20014	1	0	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0126	20015	1	1	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0127	20013	1	1	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0128	20015	1	0	1	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0129	20008	1	0	0	0	0	1	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0130	20009	1	0	0	0	0	1	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0131	20013	1	0	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0132	20008	1	1	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0133	20014	1	1	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0134	20013	1	0	0	0	0	1	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0135	20004	1	1	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	t0136	20010	1	1	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH2_chr3_48913842_48991382	0/1	t0001	3432	106	37	28	26	4	10	copy fasta	ARIH2	chr3	48913842	48991382
ARIH2_chr3_48913842_48991382	1/0	t0002	3431	72	30	11	14	10	6	copy fasta	ARIH2	chr3	48913842	48991382
ARIH2_chr3_48913842_48991382	0/0	t0003	3431	5	5	0	0	0	0	copy fasta	ARIH2	chr3	48913842	48991382
ARIH2_chr3_48913842_48991382	0/0	t0004	3431	3	3	0	0	0	0	copy fasta	ARIH2	chr3	48913842	48991382
ARIH2_chr3_48913842_48991382	0/0	t0005	3432	2	2	0	0	0	0	copy fasta	ARIH2	chr3	48913842	48991382
ARIH2_chr3_48913842_48991382	0/0	t0006	3432	2	0	2	0	0	0	copy fasta	ARIH2	chr3	48913842	48991382
ARIH2_chr3_48913842_48991382	0/0	t0007	3432	1	1	0	0	0	0	copy fasta	ARIH2	chr3	48913842	48991382
ARIH2_chr3_48913842_48991382	0/0	t0008	3432	1	0	1	0	0	0	copy fasta	ARIH2	chr3	48913842	48991382
ARIH2_chr3_48913842_48991382	0/0	t0009	3432	1	1	0	0	0	0	copy fasta	ARIH2	chr3	48913842	48991382
ARIH2_chr3_48913842_48991382	0/0	t0010	3432	1	0	0	1	0	0	copy fasta	ARIH2	chr3	48913842	48991382
ARIH2_chr3_48913842_48991382	0/0	t0011	3432	1	0	0	1	0	0	copy fasta	ARIH2	chr3	48913842	48991382
ARIH2_chr3_48913842_48991382	0/0	t0012	3432	1	0	0	1	0	0	copy fasta	ARIH2	chr3	48913842	48991382
ARIH2_chr3_48913842_48991382	0/0	t0013	3432	1	0	0	0	0	1	copy fasta	ARIH2	chr3	48913842	48991382
ARIH2_chr3_48913842_48991382	0/0	t0014	3432	1	0	0	1	0	0	copy fasta	ARIH2	chr3	48913842	48991382