JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NACC2_chr9_136001537_136100289	0/0	t0088	5149	1	0	1	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0089	5151	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0090	5141	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0091	5155	1	0	0	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0092	5133	1	0	0	0	0	1	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0093	5137	1	0	0	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0094	5130	1	0	1	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0095	5072	1	0	1	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0096	5132	1	0	0	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0097	5152	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0098	5152	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0099	5152	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0100	5151	1	0	1	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0101	5149	1	0	0	1	0	0	copy fasta	NACC2	chr9	136001537	136100289
NACC2_chr9_136001537_136100289	0/0	t0102	5140	1	1	0	0	0	0	copy fasta	NACC2	chr9	136001537	136100289
NADK2_chr5_36187589_36246925	1/0	t0001	2683	64	4	8	50	0	1	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0002	2683	58	6	22	20	5	5	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0003	2682	56	1	5	49	0	1	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0004	2685	26	1	2	13	0	10	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0005	2677	21	0	1	20	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0006	2682	17	0	4	1	2	10	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0007	2685	13	11	1	0	0	1	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0008	2682	13	13	0	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0009	2684	12	11	1	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0010	2684	10	8	2	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0011	2683	10	5	2	3	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0012	2677	5	0	0	5	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0013	2677	5	0	5	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/1	t0014	2684	5	1	3	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0015	2682	5	5	0	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0016	2676	4	0	0	4	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0017	2683	4	4	0	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0018	2683	4	0	3	1	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0019	2684	4	0	1	0	0	3	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0020	2683	4	0	2	0	0	2	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0021	2682	3	0	2	1	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0022	2683	3	2	1	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0023	2685	3	0	0	3	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0024	2678	3	0	2	0	1	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0025	2683	2	2	0	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0026	2684	2	0	0	2	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0027	2677	2	0	0	2	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0028	2683	2	1	0	0	1	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0029	2682	1	0	0	1	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0030	2683	1	0	1	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0031	2681	1	1	0	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0032	2682	1	1	0	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0033	2682	1	1	0	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0034	2684	1	0	0	1	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0035	2681	1	1	0	0	0	0	copy fasta	NADK2	chr5	36187589	36246925