JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NADK2_chr5_36187589_36246925	0/0	t0036	2681	1	1	0	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0037	2683	1	0	0	0	1	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0038	2682	1	1	0	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0039	2682	1	0	1	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0040	2683	1	0	0	1	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0041	2684	1	0	1	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0042	2683	1	1	0	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0043	2682	1	0	0	1	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0044	2677	1	0	0	1	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0045	2672	1	0	0	1	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0046	2681	1	0	1	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0047	2682	1	0	0	1	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0048	2684	1	1	0	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0049	2682	1	0	1	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0050	2682	1	1	0	0	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0051	2682	1	0	0	1	0	0	copy fasta	NADK2	chr5	36187589	36246925
NADK2_chr5_36187589_36246925	0/0	t0052	2683	1	0	0	0	0	1	copy fasta	NADK2	chr5	36187589	36246925
NADK_chr1_1746232_1783470	0/1	t0001	1895	123	3	29	64	9	17	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0002	1895	85	2	18	44	6	15	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	1/0	t0003	1895	84	21	7	45	0	10	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0004	1892	41	19	0	20	1	1	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0005	1895	20	20	0	0	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0006	1895	18	0	0	18	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0007	1895	5	5	0	0	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0008	1895	4	3	1	0	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0009	1895	3	0	2	0	1	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0010	1895	3	3	0	0	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0011	1895	3	3	0	0	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0012	1895	2	0	0	0	0	2	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0013	1895	2	0	0	2	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0014	1895	2	0	0	0	0	2	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0015	1895	2	0	0	2	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0016	1895	1	1	0	0	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0017	1895	1	0	1	0	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0018	1895	1	0	0	0	0	1	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0019	1892	1	0	0	1	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0020	1895	1	0	0	1	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0021	1895	1	0	0	1	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0022	1895	1	1	0	0	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0023	1892	1	0	0	1	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0024	1895	1	0	0	0	1	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0025	1895	1	1	0	0	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0026	1895	1	1	0	0	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0027	1895	1	1	0	0	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0028	1895	1	0	0	1	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0029	1895	1	0	1	0	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0030	1895	1	0	0	1	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0031	1895	1	0	0	1	0	0	copy fasta	NADK	chr1	1746232	1783470
NADK_chr1_1746232_1783470	0/0	t0032	1895	1	0	1	0	0	0	copy fasta	NADK	chr1	1746232	1783470
NADSYN1_chr11_71448203_71506816	1/1	t0001	559	337	79	63	144	12	37	copy fasta	NADSYN1	chr11	71448203	71506816