JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NADSYN1_chr11_71448203_71506816	0/0	t0002	559	11	0	0	10	0	1	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	t0003	559	3	3	0	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	t0004	442	2	2	0	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NADSYN1_chr11_71448203_71506816	0/0	t0005	559	1	0	1	0	0	0	copy fasta	NADSYN1	chr11	71448203	71506816
NAE1_chr16_66797878_66835976	1/1	t0001	209	374	97	70	149	16	40	copy fasta	NAE1	chr16	66797878	66835976
NAE1_chr16_66797878_66835976	0/0	t0002	209	1	1	0	0	0	0	copy fasta	NAE1	chr16	66797878	66835976
NAE1_chr16_66797878_66835976	0/0	t0003	209	1	0	0	1	0	0	copy fasta	NAE1	chr16	66797878	66835976
NAF1_chr4_163123669_163171890	0/0	t0001	392	194	41	35	86	11	21	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	1/1	t0002	392	78	11	19	37	2	7	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	0/0	t0003	392	69	26	24	5	3	11	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	0/0	t0004	392	1	0	0	0	0	1	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	0/0	t0005	392	1	0	0	1	0	0	copy fasta	NAF1	chr4	163123669	163171890
NAF1_chr4_163123669_163171890	0/0	t0006	392	1	0	0	1	0	0	copy fasta	NAF1	chr4	163123669	163171890
NAGA_chr22_42053334_42075812	0/0	t0001	2460	208	6	32	144	4	22	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/1	t0002	2460	90	8	23	37	5	16	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	t0003	2460	40	27	11	0	2	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	t0004	2459	15	14	1	0	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	t0005	2460	11	11	0	0	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	t0006	2460	10	0	4	0	3	3	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	t0007	2460	6	4	2	0	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	1/0	t0008	2461	6	1	1	1	2	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	t0009	2459	5	5	0	0	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	t0010	2460	3	0	3	0	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	t0011	2460	3	3	0	0	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	t0012	2460	3	3	0	0	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	t0013	2460	2	0	0	1	0	1	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	t0014	2460	2	0	2	0	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	t0015	2460	2	2	0	0	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	t0016	2459	2	2	0	0	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	t0017	2459	2	2	0	0	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	t0018	2460	1	0	0	0	0	1	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	t0019	2460	1	1	0	0	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	t0020	2460	1	0	0	0	0	1	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	t0021	2460	1	0	0	1	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	t0022	2460	1	1	0	0	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	t0023	2460	1	0	1	0	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	t0024	2460	1	0	0	1	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGA_chr22_42053334_42075812	0/0	t0025	2460	1	0	0	1	0	0	copy fasta	NAGA	chr22	42053334	42075812
NAGK_chr2_71063648_71084808	1/1	t0001	1337	176	39	55	45	8	27	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	t0002	1337	122	18	18	66	8	12	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	t0003	1337	78	3	6	62	0	7	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	t0004	1337	12	11	1	0	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	t0005	1337	9	3	1	5	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	t0006	1337	9	0	0	9	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	t0007	1337	5	4	1	0	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	t0008	1337	4	4	0	0	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	t0009	1337	3	3	0	0	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	t0010	1337	3	3	0	0	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	t0011	1337	3	3	0	0	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	t0012	1337	2	0	0	2	0	0	copy fasta	NAGK	chr2	71063648	71084808