JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NAGK_chr2_71063648_71084808	0/0	t0013	1337	2	2	0	0	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	t0014	1337	2	0	0	1	0	1	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	t0015	1337	1	1	0	0	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	t0016	1337	1	0	0	0	0	1	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	t0017	1337	1	0	1	0	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	t0018	1337	1	0	1	0	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	t0019	1337	1	1	0	0	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	t0020	1337	1	0	0	1	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	t0021	1337	1	1	0	0	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	t0022	1337	1	1	0	0	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	t0023	1337	1	1	0	0	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	t0024	1337	1	0	0	1	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	t0025	1337	1	0	0	1	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGK_chr2_71063648_71084808	0/0	t0026	1337	1	0	0	1	0	0	copy fasta	NAGK	chr2	71063648	71084808
NAGLU_chr17_42531241_42549449	1/1	t0001	244	422	98	74	188	16	44	copy fasta	NAGLU	chr17	42531241	42549449
NAGPA_chr16_5019844_5038935	0/0	t0001	656	208	20	38	121	4	25	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/1	t0002	656	98	21	14	50	3	9	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	t0003	656	89	27	17	27	5	13	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	t0004	656	23	7	8	3	2	3	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	t0005	656	7	7	0	0	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	t0006	656	3	3	0	0	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	t0007	653	3	3	0	0	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	t0008	656	2	2	0	0	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	1/0	t0009	656	2	1	0	0	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	t0010	656	2	0	0	2	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	t0011	656	1	0	0	1	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	t0012	656	1	0	1	0	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	t0013	656	1	1	0	0	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	t0014	656	1	1	0	0	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGPA_chr16_5019844_5038935	0/0	t0015	656	1	1	0	0	0	0	copy fasta	NAGPA	chr16	5019844	5038935
NAGS_chr17_43999622_44014068	0/0	t0001	510	176	24	33	104	3	12	copy fasta	NAGS	chr17	43999622	44014068
NAGS_chr17_43999622_44014068	0/1	t0002	510	165	32	37	60	9	26	copy fasta	NAGS	chr17	43999622	44014068
NAGS_chr17_43999622_44014068	1/0	t0003	510	38	34	3	0	0	0	copy fasta	NAGS	chr17	43999622	44014068
NAGS_chr17_43999622_44014068	0/0	t0004	510	1	0	1	0	0	0	copy fasta	NAGS	chr17	43999622	44014068
NAIF1_chr9_128056233_128072320	0/1	t0001	2415	145	27	25	60	13	19	copy fasta	NAIF1	chr9	128056233	128072320
NAIF1_chr9_128056233_128072320	0/0	t0002	2415	105	24	23	47	2	9	copy fasta	NAIF1	chr9	128056233	128072320
NAIF1_chr9_128056233_128072320	0/0	t0003	2415	22	21	1	0	0	0	copy fasta	NAIF1	chr9	128056233	128072320
NAIF1_chr9_128056233_128072320	0/0	t0004	2415	6	0	2	4	0	0	copy fasta	NAIF1	chr9	128056233	128072320
NAIF1_chr9_128056233_128072320	0/0	t0005	2415	6	5	1	0	0	0	copy fasta	NAIF1	chr9	128056233	128072320
NAIF1_chr9_128056233_128072320	0/0	t0006	2415	6	5	1	0	0	0	copy fasta	NAIF1	chr9	128056233	128072320
NAIF1_chr9_128056233_128072320	0/0	t0007	2412	5	0	3	0	0	2	copy fasta	NAIF1	chr9	128056233	128072320
NAIF1_chr9_128056233_128072320	0/0	t0008	2415	4	0	3	0	1	0	copy fasta	NAIF1	chr9	128056233	128072320
NAIF1_chr9_128056233_128072320	0/0	t0009	2415	3	3	0	0	0	0	copy fasta	NAIF1	chr9	128056233	128072320
NAIF1_chr9_128056233_128072320	0/0	t0010	2415	2	0	0	2	0	0	copy fasta	NAIF1	chr9	128056233	128072320
NAIF1_chr9_128056233_128072320	0/0	t0011	2415	2	2	0	0	0	0	copy fasta	NAIF1	chr9	128056233	128072320
NAIF1_chr9_128056233_128072320	0/0	t0012	2415	2	2	0	0	0	0	copy fasta	NAIF1	chr9	128056233	128072320
NAIF1_chr9_128056233_128072320	0/0	t0013	2415	2	2	0	0	0	0	copy fasta	NAIF1	chr9	128056233	128072320
NAIF1_chr9_128056233_128072320	0/0	t0014	2415	2	0	0	2	0	0	copy fasta	NAIF1	chr9	128056233	128072320
NAIF1_chr9_128056233_128072320	0/0	t0015	2415	1	0	0	1	0	0	copy fasta	NAIF1	chr9	128056233	128072320
NAIF1_chr9_128056233_128072320	0/0	t0016	2415	1	1	0	0	0	0	copy fasta	NAIF1	chr9	128056233	128072320