JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NAIF1_chr9_128056233_128072320	0/0	t0017	2415	1	0	0	1	0	0	copy fasta	NAIF1	chr9	128056233	128072320
NAIF1_chr9_128056233_128072320	0/0	t0018	2415	1	0	1	0	0	0	copy fasta	NAIF1	chr9	128056233	128072320
NAIF1_chr9_128056233_128072320	0/0	t0019	2415	1	0	0	1	0	0	copy fasta	NAIF1	chr9	128056233	128072320
NAIF1_chr9_128056233_128072320	1/0	t0020	2415	1	0	0	0	0	0	copy fasta	NAIF1	chr9	128056233	128072320
NAIP_chr5_70963166_71030339	0/0	t0001	2882	77	9	20	29	4	15	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/1	t0002	2882	9	2	5	0	1	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0003	2882	7	1	0	3	1	2	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0004	2882	4	2	0	1	0	1	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0005	2882	4	2	2	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0006	2903	4	3	1	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0007	2904	4	3	1	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0008	2882	4	4	0	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0009	2882	4	4	0	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0010	2882	2	0	2	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0011	2882	2	0	1	0	1	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0012	2904	1	1	0	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0013	2882	1	1	0	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0014	2882	1	1	0	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0015	2882	1	0	0	1	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0016	2882	1	1	0	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0017	2879	1	1	0	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0018	2882	1	1	0	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0019	2879	1	1	0	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0020	2903	1	0	0	0	1	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0021	2882	1	1	0	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0022	2882	1	1	0	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0023	2882	1	1	0	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0024	2882	1	0	1	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0025	2882	1	1	0	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0026	2878	1	0	0	1	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0027	2878	1	0	0	1	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0028	2882	1	0	1	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0029	2882	1	1	0	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0030	2882	1	1	0	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NAIP_chr5_70963166_71030339	0/0	t0031	2903	1	1	0	0	0	0	copy fasta	NAIP	chr5	70963166	71030339
NALCN_chr13_101048776_101421508	1/1	t0001	1755	59	13	18	17	4	5	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	t0002	1755	47	7	10	17	3	10	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	t0003	1755	16	15	1	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	t0004	1757	10	8	1	0	1	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	t0005	1755	8	1	6	0	1	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	t0006	1758	7	0	0	7	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	t0007	1758	6	6	0	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	t0008	1755	4	4	0	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	t0009	1755	4	1	0	1	0	2	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	t0010	1755	3	3	0	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	t0011	1755	2	1	1	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	t0012	1755	2	0	1	0	1	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	t0013	1755	1	0	0	0	0	1	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	t0014	1755	1	1	0	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	t0015	1755	1	0	0	1	0	0	copy fasta	NALCN	chr13	101048776	101421508