JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NALCN_chr13_101048776_101421508	0/0	t0016	1755	1	0	0	1	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	t0017	1755	1	0	0	1	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	t0018	1758	1	1	0	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	t0019	1755	1	0	0	1	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALCN_chr13_101048776_101421508	0/0	t0020	1755	1	1	0	0	0	0	copy fasta	NALCN	chr13	101048776	101421508
NALF1_chr13_107158510_107872496	0/0	t0001	7878	6	2	1	1	1	1	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0002	7885	5	0	0	5	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0003	7881	5	1	3	1	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0004	7878	4	2	1	1	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0005	7875	3	0	0	3	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0006	7888	3	1	0	2	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0007	7888	3	0	0	1	0	2	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0008	7881	3	1	0	2	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0009	7869	2	0	1	0	0	1	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0010	7879	2	2	0	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0011	7877	2	0	0	2	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0012	7885	2	0	0	2	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0013	7878	2	2	0	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0014	7874	2	2	0	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0015	7880	2	0	0	1	1	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0016	7878	2	0	2	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0017	7876	1	0	1	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0018	7878	1	1	0	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0019	7867	1	0	0	0	0	1	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0020	7868	1	0	1	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0021	7868	1	0	1	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0022	7864	1	1	0	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0023	7876	1	0	0	0	1	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0024	7869	1	0	1	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0025	7877	1	1	0	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0026	7871	1	0	1	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0027	7867	1	0	0	0	0	1	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0028	7867	1	0	1	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0029	7872	1	1	0	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0030	7877	1	1	0	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0031	7878	1	1	0	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0032	7875	1	1	0	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0033	7875	1	1	0	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0034	7886	1	1	0	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0035	7880	1	1	0	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0036	7873	1	1	0	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0037	7880	1	1	0	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0038	7875	1	1	0	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0039	7877	1	0	0	1	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0040	7887	1	1	0	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0041	7885	1	1	0	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0042	7883	1	0	0	1	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0043	7885	1	0	0	1	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0044	7878	1	1	0	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF1_chr13_107158510_107872496	0/0	t0045	7880	1	0	0	1	0	0	copy fasta	NALF1	chr13	107158510	107872496