JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NALF1_chr13_107158510_107872496	0/0	t0096	7900	1	0	1	0	0	0	copy fasta	NALF1	chr13	107158510	107872496
NALF2_chrX_69499326_69537508	0/0	t0001	3510	159	22	19	110	0	8	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/1	t0002	3510	56	30	6	12	1	6	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	1/0	t0003	3510	52	7	13	14	6	11	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0004	3510	14	0	1	5	2	6	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0005	3503	7	7	0	0	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0006	3510	3	0	2	0	0	1	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0007	3503	2	2	0	0	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0008	3510	2	0	0	0	1	1	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0009	3510	2	0	0	2	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0010	3510	1	0	0	0	0	1	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0011	3503	1	1	0	0	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0012	3510	1	0	1	0	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0013	3511	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0014	3509	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0015	3510	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0016	3510	1	1	0	0	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0017	3510	1	1	0	0	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0018	3510	1	1	0	0	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0019	3510	1	0	1	0	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0020	3510	1	0	1	0	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0021	3510	1	1	0	0	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0022	3510	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0023	3510	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0024	3510	1	0	1	0	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0025	3510	1	0	0	0	1	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0026	3510	1	0	1	0	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0027	3511	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0028	3498	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0029	3510	1	1	0	0	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0030	3516	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0031	3515	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0032	3510	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0033	3510	1	0	1	0	0	0	copy fasta	NALF2	chrX	69499326	69537508
NALF2_chrX_69499326_69537508	0/0	t0034	3532	1	0	0	1	0	0	copy fasta	NALF2	chrX	69499326	69537508
NAMPT_chr7_106243298_106289983	0/0	t0001	2885	197	12	38	116	4	27	copy fasta	NAMPT	chr7	106243298	106289983
NAMPT_chr7_106243298_106289983	1/1	t0002	2885	63	25	14	13	2	7	copy fasta	NAMPT	chr7	106243298	106289983
NAMPT_chr7_106243298_106289983	0/0	t0003	2885	28	24	3	0	1	0	copy fasta	NAMPT	chr7	106243298	106289983
NAMPT_chr7_106243298_106289983	0/0	t0004	2885	20	15	2	3	0	0	copy fasta	NAMPT	chr7	106243298	106289983
NAMPT_chr7_106243298_106289983	0/0	t0005	2885	4	0	0	1	0	3	copy fasta	NAMPT	chr7	106243298	106289983
NAMPT_chr7_106243298_106289983	0/0	t0006	2885	3	3	0	0	0	0	copy fasta	NAMPT	chr7	106243298	106289983
NAMPT_chr7_106243298_106289983	0/0	t0007	2885	2	0	2	0	0	0	copy fasta	NAMPT	chr7	106243298	106289983
NAMPT_chr7_106243298_106289983	0/0	t0008	2885	2	2	0	0	0	0	copy fasta	NAMPT	chr7	106243298	106289983
NAMPT_chr7_106243298_106289983	0/0	t0009	2885	1	1	0	0	0	0	copy fasta	NAMPT	chr7	106243298	106289983
NAMPT_chr7_106243298_106289983	0/0	t0010	2885	1	1	0	0	0	0	copy fasta	NAMPT	chr7	106243298	106289983
NAMPT_chr7_106243298_106289983	0/0	t0011	2885	1	1	0	0	0	0	copy fasta	NAMPT	chr7	106243298	106289983
NAMPT_chr7_106243298_106289983	0/0	t0012	2885	1	0	0	0	0	1	copy fasta	NAMPT	chr7	106243298	106289983
NAMPT_chr7_106243298_106289983	0/0	t0013	2885	1	0	1	0	0	0	copy fasta	NAMPT	chr7	106243298	106289983
NAMPT_chr7_106243298_106289983	0/0	t0014	2885	1	1	0	0	0	0	copy fasta	NAMPT	chr7	106243298	106289983
NAMPT_chr7_106243298_106289983	0/0	t0015	2885	1	0	0	1	0	0	copy fasta	NAMPT	chr7	106243298	106289983