JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NAMPT_chr7_106243298_106289983	0/0	t0016	2885	1	0	0	0	0	1	copy fasta	NAMPT	chr7	106243298	106289983
NAMPT_chr7_106243298_106289983	0/0	t0017	2885	1	1	0	0	0	0	copy fasta	NAMPT	chr7	106243298	106289983
NAMPT_chr7_106243298_106289983	0/0	t0018	2885	1	1	0	0	0	0	copy fasta	NAMPT	chr7	106243298	106289983
NAMPT_chr7_106243298_106289983	0/0	t0019	2885	1	1	0	0	0	0	copy fasta	NAMPT	chr7	106243298	106289983
NAMPT_chr7_106243298_106289983	0/0	t0020	2885	1	1	0	0	0	0	copy fasta	NAMPT	chr7	106243298	106289983
NAMPT_chr7_106243298_106289983	0/0	t0021	2885	1	0	0	0	0	1	copy fasta	NAMPT	chr7	106243298	106289983
NAMPT_chr7_106243298_106289983	0/0	t0022	2885	1	0	0	1	0	0	copy fasta	NAMPT	chr7	106243298	106289983
NAMPT_chr7_106243298_106289983	0/0	t0023	2885	1	1	0	0	0	0	copy fasta	NAMPT	chr7	106243298	106289983
NAMPT_chr7_106243298_106289983	0/0	t0024	2885	1	0	0	1	0	0	copy fasta	NAMPT	chr7	106243298	106289983
NAMPT_chr7_106243298_106289983	0/0	t0025	2885	1	0	0	0	1	0	copy fasta	NAMPT	chr7	106243298	106289983
NANOGNB_chr12_7760216_7779121	1/1	t0001	341	459	98	82	215	16	46	copy fasta	NANOGNB	chr12	7760216	7779121
NANOGNB_chr12_7760216_7779121	0/0	t0002	341	1	0	0	1	0	0	copy fasta	NANOGNB	chr12	7760216	7779121
NANOGP8_chr15_35078410_35090295	0/0	t0001	968	112	18	16	59	6	13	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/1	t0002	967	99	5	24	53	2	14	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0003	967	67	29	3	33	1	1	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0004	967	48	4	18	8	8	10	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0005	966	31	0	9	22	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0006	969	14	10	4	0	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0007	967	11	0	0	11	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0008	966	9	0	0	9	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0009	968	9	7	2	0	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0010	965	6	0	0	6	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0011	967	5	0	0	5	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0012	968	5	4	0	0	1	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0013	968	5	0	0	5	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0014	966	4	4	0	0	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0015	969	4	1	0	2	0	1	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0016	967	3	3	0	0	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0017	967	3	0	1	0	0	2	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0018	968	2	1	0	1	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0019	966	2	2	0	0	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0020	966	2	0	0	2	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0021	967	2	0	0	2	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0022	968	2	0	0	2	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0023	968	2	0	2	0	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0024	968	2	2	0	0	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0025	969	2	0	2	0	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	1/0	t0026	969	2	1	0	0	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0027	966	1	0	0	1	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0028	968	1	0	0	1	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0029	967	1	0	0	1	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0030	967	1	0	0	1	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0031	967	1	0	0	1	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0032	965	1	0	0	1	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0033	966	1	0	0	1	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0034	966	1	0	1	0	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0035	967	1	0	1	0	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0036	967	1	0	0	1	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0037	967	1	0	0	1	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0038	967	1	1	0	0	0	0	copy fasta	NANOGP8	chr15	35078410	35090295