JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NANOGP8_chr15_35078410_35090295	0/0	t0039	968	1	0	0	1	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0040	968	1	0	0	1	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0041	969	1	1	0	0	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0042	968	1	0	0	1	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0043	968	1	0	0	1	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0044	969	1	1	0	0	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0045	969	1	0	0	1	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0046	969	1	1	0	0	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0047	969	1	1	0	0	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0048	967	1	0	0	0	0	1	copy fasta	NANOGP8	chr15	35078410	35090295
NANOGP8_chr15_35078410_35090295	0/0	t0049	968	1	0	1	0	0	0	copy fasta	NANOGP8	chr15	35078410	35090295
NANOG_chr12_7784402_7804146	0/0	t0001	4266	65	4	8	49	1	3	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0002	4285	54	0	3	34	4	13	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0003	4265	47	9	2	36	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0004	4276	46	4	21	10	4	7	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0005	4259	27	7	3	13	0	4	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0006	4267	22	0	0	20	0	2	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0007	4278	17	0	9	0	2	6	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0008	4266	15	9	5	1	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0009	4275	14	14	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0010	4262	10	7	3	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0011	4286	7	3	1	3	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	1/0	t0012	4265	6	3	2	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0013	4264	5	5	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0014	4263	5	5	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0015	4289	5	0	0	5	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0016	4276	4	0	0	4	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0017	4267	4	0	0	4	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0018	4285	4	0	1	3	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0019	4266	4	0	4	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0020	4275	3	0	1	1	0	1	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0021	4265	3	0	0	3	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0022	4276	2	0	1	0	1	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0023	4277	2	0	0	0	2	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0024	4280	2	2	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0025	4259	2	0	0	0	0	2	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0026	4262	2	1	1	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0027	4266	2	2	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0028	4284	2	0	0	2	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0029	4285	2	0	0	2	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0030	4274	1	1	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0031	4275	1	1	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0032	4275	1	1	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0033	4267	1	1	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0034	4264	1	1	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0035	4275	1	0	0	0	0	1	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0036	4280	1	0	1	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0037	4273	1	0	1	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0038	4276	1	0	1	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0039	4275	1	1	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146