Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARIH2_chr3_48913842_48991382	0/0	t0015	3432	1	0	0	0	0	1	copy fasta	ARIH2	chr3	48913842	48991382
ARIH2_chr3_48913842_48991382	0/0	t0016	3431	1	0	0	1	0	0	copy fasta	ARIH2	chr3	48913842	48991382
ARIH2_chr3_48913842_48991382	0/0	t0017	3431	1	0	0	1	0	0	copy fasta	ARIH2	chr3	48913842	48991382
ARIH2_chr3_48913842_48991382	0/0	t0018	3431	1	1	0	0	0	0	copy fasta	ARIH2	chr3	48913842	48991382
ARK2C_chr18_46329018_46468140	0/0	t0001	6756	51	5	7	31	1	7	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0002	6762	34	0	7	18	3	6	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	1/0	t0003	6762	22	18	2	0	0	1	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0004	6756	16	0	1	15	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0005	6762	14	1	7	1	1	4	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0006	6763	8	2	1	0	1	4	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0007	6762	7	7	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0008	6762	7	7	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0009	6756	7	0	2	4	1	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/1	t0010	6762	6	0	5	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0011	6756	6	0	4	0	0	2	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0012	6762	5	5	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0013	6756	4	0	3	1	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0014	6764	3	3	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0015	6756	3	1	2	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0016	6763	3	3	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0017	6756	3	1	0	2	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0018	6762	3	3	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0019	6756	2	0	2	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0020	6762	2	2	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0021	6762	2	2	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0022	6756	2	0	0	2	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0023	6756	2	0	0	0	0	2	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0024	6762	2	2	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0025	6763	2	2	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0026	6757	2	0	0	2	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0027	6762	2	0	0	0	0	2	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0028	6762	1	1	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0029	6757	1	0	1	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0030	6763	1	1	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0031	6762	1	1	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0032	6762	1	1	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0033	6762	1	0	0	0	0	1	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0034	6762	1	0	0	1	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0035	6762	1	1	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0036	6763	1	1	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0037	6757	1	1	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0038	6762	1	0	0	0	0	1	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0039	6757	1	0	1	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0040	6762	1	0	0	0	0	1	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0041	6751	1	0	0	0	0	1	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0042	6764	1	0	1	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0043	6763	1	1	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0044	6762	1	0	1	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0045	6756	1	1	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	t0046	6756	1	1	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140