JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NANOG_chr12_7784402_7804146	0/0	t0040	4278	1	1	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0041	4278	1	1	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0042	4278	1	0	0	0	0	1	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0043	4275	1	0	1	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0044	4278	1	1	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0045	4279	1	0	0	0	0	1	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0046	4281	1	1	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0047	4259	1	1	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0048	4260	1	0	1	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0049	4258	1	1	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0050	4260	1	0	0	1	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0051	4264	1	0	0	1	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0052	4281	1	1	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0053	4282	1	0	0	1	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0054	4283	1	0	1	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0055	4281	1	0	0	1	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0056	4266	1	0	0	1	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0057	4265	1	1	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0058	4265	1	0	0	1	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0059	4262	1	1	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0060	4266	1	0	0	1	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0061	4266	1	0	1	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0062	4267	1	0	0	1	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0063	4265	1	0	0	1	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0064	4264	1	0	1	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0065	4266	1	0	0	1	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0066	4267	1	0	0	1	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0067	4269	1	1	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0068	4289	1	0	0	1	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0069	4285	1	0	0	1	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0070	4285	1	0	0	1	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0071	4285	1	0	0	0	0	1	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0072	4286	1	0	1	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0073	4287	1	0	1	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0074	4265	1	0	1	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0075	4267	1	0	0	1	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0076	4263	1	1	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0077	4266	1	0	0	1	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/1	t0078	4266	1	0	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0079	4276	1	1	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOG_chr12_7784402_7804146	0/0	t0080	4269	1	1	0	0	0	0	copy fasta	NANOG	chr12	7784402	7804146
NANOS1_chr10_119024714_119038730	0/0	t0001	3142	156	18	34	70	7	27	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/1	t0002	3135	125	9	27	72	7	9	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0003	3139	22	12	3	7	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0004	3139	19	0	0	17	0	2	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0005	3139	19	18	1	0	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0006	3143	11	11	0	0	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0007	3139	6	6	0	0	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0008	3142	4	0	0	4	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0009	3136	3	1	1	1	0	0	copy fasta	NANOS1	chr10	119024714	119038730