JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NANOS1_chr10_119024714_119038730	0/0	t0010	3135	3	2	0	1	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0011	3139	3	3	0	0	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0012	3135	2	0	0	0	2	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0013	3142	2	0	1	1	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0014	3142	2	1	1	0	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0015	3142	2	0	1	0	0	1	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0016	3142	2	0	0	0	0	2	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0017	3140	2	1	0	1	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0018	3139	2	2	0	0	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0019	3139	2	2	0	0	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0020	3135	1	0	0	0	0	1	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0021	3135	1	0	0	1	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0022	3135	1	1	0	0	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0023	3150	1	1	0	0	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0024	3139	1	0	0	1	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0025	3143	1	1	0	0	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0026	3142	1	0	1	0	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	1/0	t0027	3139	1	0	0	0	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0028	3142	1	0	0	0	0	1	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0029	3139	1	1	0	0	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0030	3139	1	1	0	0	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0031	3139	1	1	0	0	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0032	3139	1	1	0	0	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0033	3142	1	0	0	0	0	1	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0034	3139	1	1	0	0	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0035	3135	1	0	0	1	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS1_chr10_119024714_119038730	0/0	t0036	3139	1	0	0	1	0	0	copy fasta	NANOS1	chr10	119024714	119038730
NANOS2_chr19_45908214_45919778	0/1	t0001	1149	317	64	57	155	9	31	copy fasta	NANOS2	chr19	45908214	45919778
NANOS2_chr19_45908214_45919778	1/0	t0002	1149	93	11	11	53	4	13	copy fasta	NANOS2	chr19	45908214	45919778
NANOS2_chr19_45908214_45919778	0/0	t0003	1149	14	0	12	0	1	1	copy fasta	NANOS2	chr19	45908214	45919778
NANOS2_chr19_45908214_45919778	0/0	t0004	1149	10	10	0	0	0	0	copy fasta	NANOS2	chr19	45908214	45919778
NANOS2_chr19_45908214_45919778	0/0	t0005	1149	3	3	0	0	0	0	copy fasta	NANOS2	chr19	45908214	45919778
NANOS2_chr19_45908214_45919778	0/0	t0006	1149	1	0	0	0	0	1	copy fasta	NANOS2	chr19	45908214	45919778
NANOS2_chr19_45908214_45919778	0/0	t0007	1149	1	1	0	0	0	0	copy fasta	NANOS2	chr19	45908214	45919778
NANOS2_chr19_45908214_45919778	0/0	t0008	1149	1	0	0	1	0	0	copy fasta	NANOS2	chr19	45908214	45919778
NANOS2_chr19_45908214_45919778	0/0	t0009	1149	1	1	0	0	0	0	copy fasta	NANOS2	chr19	45908214	45919778
NANOS2_chr19_45908214_45919778	0/0	t0010	1149	1	0	0	1	0	0	copy fasta	NANOS2	chr19	45908214	45919778
NANOS3_chr19_13872134_13885757	1/1	t0001	370	257	50	54	112	11	28	copy fasta	NANOS3	chr19	13872134	13885757
NANOS3_chr19_13872134_13885757	0/0	t0002	370	106	27	15	50	4	10	copy fasta	NANOS3	chr19	13872134	13885757
NANOS3_chr19_13872134_13885757	0/0	t0003	370	11	10	1	0	0	0	copy fasta	NANOS3	chr19	13872134	13885757
NANOS3_chr19_13872134_13885757	0/0	t0004	370	4	0	4	0	0	0	copy fasta	NANOS3	chr19	13872134	13885757
NANOS3_chr19_13872134_13885757	0/0	t0005	370	1	1	0	0	0	0	copy fasta	NANOS3	chr19	13872134	13885757
NANOS3_chr19_13872134_13885757	0/0	t0006	370	1	0	0	0	1	0	copy fasta	NANOS3	chr19	13872134	13885757
NANP_chr20_25607935_25629014	0/0	t0001	3057	88	1	14	62	0	11	copy fasta	NANP	chr20	25607935	25629014
NANP_chr20_25607935_25629014	0/0	t0002	3057	66	1	6	54	2	3	copy fasta	NANP	chr20	25607935	25629014
NANP_chr20_25607935_25629014	0/0	t0003	3057	49	10	19	2	6	12	copy fasta	NANP	chr20	25607935	25629014
NANP_chr20_25607935_25629014	0/0	t0004	3057	40	16	3	21	0	0	copy fasta	NANP	chr20	25607935	25629014
NANP_chr20_25607935_25629014	0/1	t0005	3057	33	17	8	0	3	4	copy fasta	NANP	chr20	25607935	25629014
NANP_chr20_25607935_25629014	0/0	t0006	3057	31	7	12	0	1	11	copy fasta	NANP	chr20	25607935	25629014
NANP_chr20_25607935_25629014	0/0	t0007	3057	19	14	2	0	0	3	copy fasta	NANP	chr20	25607935	25629014