JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NANP_chr20_25607935_25629014	1/0	t0008	3057	15	0	9	0	3	2	copy fasta	NANP	chr20	25607935	25629014
NANP_chr20_25607935_25629014	0/0	t0009	3056	11	10	1	0	0	0	copy fasta	NANP	chr20	25607935	25629014
NANP_chr20_25607935_25629014	0/0	t0010	3057	6	0	0	6	0	0	copy fasta	NANP	chr20	25607935	25629014
NANP_chr20_25607935_25629014	0/0	t0011	3057	5	0	0	5	0	0	copy fasta	NANP	chr20	25607935	25629014
NANP_chr20_25607935_25629014	0/0	t0012	3057	5	4	1	0	0	0	copy fasta	NANP	chr20	25607935	25629014
NANP_chr20_25607935_25629014	0/0	t0013	3057	4	2	2	0	0	0	copy fasta	NANP	chr20	25607935	25629014
NANP_chr20_25607935_25629014	0/0	t0014	3057	2	2	0	0	0	0	copy fasta	NANP	chr20	25607935	25629014
NANP_chr20_25607935_25629014	0/0	t0015	3057	1	0	0	0	1	0	copy fasta	NANP	chr20	25607935	25629014
NANP_chr20_25607935_25629014	0/0	t0016	3057	1	0	0	1	0	0	copy fasta	NANP	chr20	25607935	25629014
NANP_chr20_25607935_25629014	0/0	t0017	3057	1	1	0	0	0	0	copy fasta	NANP	chr20	25607935	25629014
NANP_chr20_25607935_25629014	0/0	t0018	3057	1	1	0	0	0	0	copy fasta	NANP	chr20	25607935	25629014
NANP_chr20_25607935_25629014	0/0	t0019	3057	1	0	1	0	0	0	copy fasta	NANP	chr20	25607935	25629014
NANP_chr20_25607935_25629014	0/0	t0020	3057	1	1	0	0	0	0	copy fasta	NANP	chr20	25607935	25629014
NANP_chr20_25607935_25629014	0/0	t0021	3057	1	1	0	0	0	0	copy fasta	NANP	chr20	25607935	25629014
NANP_chr20_25607935_25629014	0/0	t0022	3057	1	0	0	1	0	0	copy fasta	NANP	chr20	25607935	25629014
NANP_chr20_25607935_25629014	0/0	t0023	3056	1	1	0	0	0	0	copy fasta	NANP	chr20	25607935	25629014
NANP_chr20_25607935_25629014	0/0	t0024	3057	1	1	0	0	0	0	copy fasta	NANP	chr20	25607935	25629014
NANS_chr9_98051732_98088077	0/0	t0001	100	189	69	40	62	3	15	copy fasta	NANS	chr9	98051732	98088077
NANS_chr9_98051732_98088077	1/1	t0002	100	129	3	26	74	7	17	copy fasta	NANS	chr9	98051732	98088077
NAP1L1_chr12_76031585_76089685	0/0	t0001	11985	66	0	8	50	0	8	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/1	t0002	11986	45	4	12	17	5	6	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0003	11986	24	0	1	23	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0004	11987	23	2	9	3	2	7	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	1/0	t0005	11984	21	6	8	0	1	5	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0006	11986	16	2	7	6	1	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0007	11986	8	8	0	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0008	11986	6	0	4	2	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0009	11987	4	4	0	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0010	11984	4	0	1	0	2	1	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0011	11988	4	0	0	4	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0012	11987	4	2	0	0	0	2	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0013	11985	4	3	1	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0014	11974	4	4	0	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0015	11969	4	3	1	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0016	11985	3	3	0	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0017	11986	3	2	1	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0018	11983	3	0	3	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0019	11983	3	3	0	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0020	11988	2	2	0	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0021	11988	2	0	0	0	1	1	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0022	11986	2	2	0	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0023	11986	2	2	0	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0024	11985	2	2	0	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0025	11986	2	2	0	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0026	11985	2	0	2	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0027	11986	2	0	1	0	1	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0028	11987	2	2	0	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0029	11988	2	2	0	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0030	11986	2	2	0	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0031	11987	2	2	0	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685