JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NAP1L1_chr12_76031585_76089685	0/0	t0082	11986	1	0	0	1	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0083	11987	1	0	1	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0084	11988	1	0	0	1	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0085	11986	1	1	0	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0086	11987	1	0	0	1	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0087	11986	1	0	0	1	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0088	11987	1	1	0	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0089	11986	1	0	0	1	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0090	11987	1	0	0	1	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0091	11986	1	0	0	1	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0092	11988	1	0	0	1	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0093	11985	1	0	0	0	0	1	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0094	11985	1	0	0	1	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0095	11986	1	0	0	1	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0096	11986	1	0	0	1	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0097	11984	1	0	0	1	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0098	11985	1	0	0	1	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0099	11987	1	1	0	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0100	11988	1	1	0	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0101	11987	1	1	0	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0102	11985	1	1	0	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0103	11970	1	1	0	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L1_chr12_76031585_76089685	0/0	t0104	11987	1	0	1	0	0	0	copy fasta	NAP1L1	chr12	76031585	76089685
NAP1L2_chrX_73207299_73219851	1/1	t0001	1171	264	67	49	109	11	26	copy fasta	NAP1L2	chrX	73207299	73219851
NAP1L2_chrX_73207299_73219851	0/0	t0002	1171	7	6	1	0	0	0	copy fasta	NAP1L2	chrX	73207299	73219851
NAP1L2_chrX_73207299_73219851	0/0	t0003	1171	3	3	0	0	0	0	copy fasta	NAP1L2	chrX	73207299	73219851
NAP1L2_chrX_73207299_73219851	0/0	t0004	1171	2	2	0	0	0	0	copy fasta	NAP1L2	chrX	73207299	73219851
NAP1L2_chrX_73207299_73219851	0/0	t0005	1171	1	0	0	1	0	0	copy fasta	NAP1L2	chrX	73207299	73219851
NAP1L2_chrX_73207299_73219851	0/0	t0006	1171	1	0	1	0	0	0	copy fasta	NAP1L2	chrX	73207299	73219851
NAP1L2_chrX_73207299_73219851	0/0	t0007	1171	1	0	0	1	0	0	copy fasta	NAP1L2	chrX	73207299	73219851
NAP1L2_chrX_73207299_73219851	0/0	t0008	1171	1	0	0	1	0	0	copy fasta	NAP1L2	chrX	73207299	73219851
NAP1L2_chrX_73207299_73219851	0/0	t0009	1171	1	1	0	0	0	0	copy fasta	NAP1L2	chrX	73207299	73219851
NAP1L2_chrX_73207299_73219851	0/0	t0010	1171	1	0	1	0	0	0	copy fasta	NAP1L2	chrX	73207299	73219851
NAP1L3_chrX_93665930_93678578	1/0	t0001	1129	304	67	54	143	13	26	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L3_chrX_93665930_93678578	0/1	t0002	1128	19	0	3	11	0	4	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L3_chrX_93665930_93678578	0/0	t0003	1129	6	6	0	0	0	0	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L3_chrX_93665930_93678578	0/0	t0004	1129	2	0	1	0	0	1	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L3_chrX_93665930_93678578	0/0	t0005	1128	2	0	1	1	0	0	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L3_chrX_93665930_93678578	0/0	t0006	1129	1	1	0	0	0	0	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L3_chrX_93665930_93678578	0/0	t0007	1129	1	1	0	0	0	0	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L3_chrX_93665930_93678578	0/0	t0008	1128	1	0	0	1	0	0	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L3_chrX_93665930_93678578	0/0	t0009	1129	1	1	0	0	0	0	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L3_chrX_93665930_93678578	0/0	t0010	1127	1	0	0	0	0	1	copy fasta	NAP1L3	chrX	93665930	93678578
NAP1L4_chr11_2939437_2997329	0/0	t0001	1336	204	74	32	62	10	26	copy fasta	NAP1L4	chr11	2939437	2997329
NAP1L4_chr11_2939437_2997329	0/1	t0002	1336	103	5	19	60	4	14	copy fasta	NAP1L4	chr11	2939437	2997329
NAP1L4_chr11_2939437_2997329	0/0	t0003	1336	7	7	0	0	0	0	copy fasta	NAP1L4	chr11	2939437	2997329
NAP1L4_chr11_2939437_2997329	0/0	t0004	1336	4	2	0	0	1	1	copy fasta	NAP1L4	chr11	2939437	2997329
NAP1L4_chr11_2939437_2997329	0/0	t0005	1336	4	3	1	0	0	0	copy fasta	NAP1L4	chr11	2939437	2997329
NAP1L4_chr11_2939437_2997329	0/0	t0006	1336	3	0	0	3	0	0	copy fasta	NAP1L4	chr11	2939437	2997329
NAP1L4_chr11_2939437_2997329	0/0	t0007	1336	2	2	0	0	0	0	copy fasta	NAP1L4	chr11	2939437	2997329