JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NAP1L4_chr11_2939437_2997329	0/0	t0008	1336	1	1	0	0	0	0	copy fasta	NAP1L4	chr11	2939437	2997329
NAP1L4_chr11_2939437_2997329	0/0	t0009	1336	1	1	0	0	0	0	copy fasta	NAP1L4	chr11	2939437	2997329
NAP1L4_chr11_2939437_2997329	0/0	t0010	1336	1	0	0	0	0	1	copy fasta	NAP1L4	chr11	2939437	2997329
NAP1L4_chr11_2939437_2997329	0/0	t0011	1336	1	1	0	0	0	0	copy fasta	NAP1L4	chr11	2939437	2997329
NAP1L4_chr11_2939437_2997329	0/0	t0012	1336	1	0	0	1	0	0	copy fasta	NAP1L4	chr11	2939437	2997329
NAP1L4_chr11_2939437_2997329	0/0	t0013	1336	1	1	0	0	0	0	copy fasta	NAP1L4	chr11	2939437	2997329
NAP1L4_chr11_2939437_2997329	0/0	t0014	1336	1	0	0	0	1	0	copy fasta	NAP1L4	chr11	2939437	2997329
NAP1L4_chr11_2939437_2997329	0/0	t0015	1325	1	1	0	0	0	0	copy fasta	NAP1L4	chr11	2939437	2997329
NAP1L5_chr4_88690913_88702829	1/1	t0001	1369	194	40	46	82	7	17	copy fasta	NAP1L5	chr4	88690913	88702829
NAP1L5_chr4_88690913_88702829	0/0	t0002	1369	115	29	5	60	1	20	copy fasta	NAP1L5	chr4	88690913	88702829
NAP1L5_chr4_88690913_88702829	0/0	t0003	1367	75	14	8	48	3	2	copy fasta	NAP1L5	chr4	88690913	88702829
NAP1L5_chr4_88690913_88702829	0/0	t0004	1369	10	7	2	0	1	0	copy fasta	NAP1L5	chr4	88690913	88702829
NAP1L5_chr4_88690913_88702829	0/0	t0005	1369	9	4	3	1	0	1	copy fasta	NAP1L5	chr4	88690913	88702829
NAP1L5_chr4_88690913_88702829	0/0	t0006	1369	3	0	2	0	0	1	copy fasta	NAP1L5	chr4	88690913	88702829
NAP1L5_chr4_88690913_88702829	0/0	t0007	1369	2	0	1	0	0	1	copy fasta	NAP1L5	chr4	88690913	88702829
NAP1L5_chr4_88690913_88702829	0/0	t0008	1367	2	0	0	2	0	0	copy fasta	NAP1L5	chr4	88690913	88702829
NAP1L5_chr4_88690913_88702829	0/0	t0009	1369	1	0	0	1	0	0	copy fasta	NAP1L5	chr4	88690913	88702829
NAP1L5_chr4_88690913_88702829	0/0	t0010	1369	1	0	1	0	0	0	copy fasta	NAP1L5	chr4	88690913	88702829
NAP1L5_chr4_88690913_88702829	0/0	t0011	1369	1	0	0	1	0	0	copy fasta	NAP1L5	chr4	88690913	88702829
NAP1L5_chr4_88690913_88702829	0/0	t0012	1369	1	0	0	1	0	0	copy fasta	NAP1L5	chr4	88690913	88702829
NAPA_chr19_47482637_47520063	0/1	t0001	775	157	20	36	69	9	22	copy fasta	NAPA	chr19	47482637	47520063
NAPA_chr19_47482637_47520063	0/0	t0002	775	94	17	23	46	2	6	copy fasta	NAPA	chr19	47482637	47520063
NAPA_chr19_47482637_47520063	1/0	t0003	775	44	20	1	14	3	5	copy fasta	NAPA	chr19	47482637	47520063
NAPA_chr19_47482637_47520063	0/0	t0004	775	14	14	0	0	0	0	copy fasta	NAPA	chr19	47482637	47520063
NAPA_chr19_47482637_47520063	0/0	t0005	775	8	5	3	0	0	0	copy fasta	NAPA	chr19	47482637	47520063
NAPA_chr19_47482637_47520063	0/0	t0006	775	6	0	6	0	0	0	copy fasta	NAPA	chr19	47482637	47520063
NAPA_chr19_47482637_47520063	0/0	t0007	775	6	6	0	0	0	0	copy fasta	NAPA	chr19	47482637	47520063
NAPA_chr19_47482637_47520063	0/0	t0008	775	4	1	1	0	0	2	copy fasta	NAPA	chr19	47482637	47520063
NAPA_chr19_47482637_47520063	0/0	t0009	775	1	1	0	0	0	0	copy fasta	NAPA	chr19	47482637	47520063
NAPA_chr19_47482637_47520063	0/0	t0010	775	1	0	0	0	0	1	copy fasta	NAPA	chr19	47482637	47520063
NAPA_chr19_47482637_47520063	0/0	t0011	775	1	0	0	1	0	0	copy fasta	NAPA	chr19	47482637	47520063
NAPA_chr19_47482637_47520063	0/0	t0012	775	1	0	0	1	0	0	copy fasta	NAPA	chr19	47482637	47520063
NAPA_chr19_47482637_47520063	0/0	t0013	775	1	0	0	1	0	0	copy fasta	NAPA	chr19	47482637	47520063
NAPB_chr20_23369522_23426488	0/0	t0001	2936	105	11	19	62	6	7	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/1	t0002	2942	82	33	9	31	0	8	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	t0003	2942	61	1	5	53	0	2	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	1/0	t0004	2941	37	4	12	15	2	3	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	t0005	2941	36	2	7	12	4	11	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	t0006	2942	21	4	0	17	0	0	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	t0007	2939	11	10	1	0	0	0	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	t0008	2939	6	5	1	0	0	0	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	t0009	2941	4	4	0	0	0	0	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	t0010	2939	4	4	0	0	0	0	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	t0011	2942	3	0	3	0	0	0	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	t0012	2942	2	0	0	2	0	0	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	t0013	2942	2	0	0	2	0	0	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	t0014	2942	2	0	0	2	0	0	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	t0015	2942	2	2	0	0	0	0	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	t0016	2942	2	2	0	0	0	0	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	t0017	2942	2	1	1	0	0	0	copy fasta	NAPB	chr20	23369522	23426488