JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NAPB_chr20_23369522_23426488	0/0	t0018	2942	2	0	1	0	0	1	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	t0019	2942	1	0	0	1	0	0	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	t0020	2942	1	1	0	0	0	0	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	t0021	2941	1	0	1	0	0	0	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	t0022	2941	1	0	0	0	0	1	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	t0023	2941	1	0	1	0	0	0	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	t0024	2936	1	0	0	1	0	0	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	t0025	2941	1	0	1	0	0	0	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	t0026	2941	1	0	0	0	0	1	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	t0027	2941	1	1	0	0	0	0	copy fasta	NAPB	chr20	23369522	23426488
NAPB_chr20_23369522_23426488	0/0	t0028	2942	1	1	0	0	0	0	copy fasta	NAPB	chr20	23369522	23426488
NAPEPLD_chr7_103094776_103154099	0/1	t0001	3960	156	20	26	86	4	19	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0002	3960	116	8	25	59	7	17	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0003	3959	18	18	0	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0004	3961	14	0	1	7	1	5	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0005	3961	11	0	2	8	0	1	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0006	3960	8	6	1	0	1	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0007	3959	7	7	0	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0008	3960	6	0	1	5	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0009	3959	5	4	1	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0010	3960	5	5	0	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0011	3959	4	3	1	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0012	3959	3	0	3	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0013	3960	3	3	0	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0014	3959	3	2	1	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0015	3959	2	2	0	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0016	3959	2	2	0	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0017	3960	2	2	0	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0018	3960	1	0	0	0	1	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0019	3960	1	0	0	0	0	1	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0020	3960	1	1	0	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0021	3960	1	0	0	0	0	1	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0022	3960	1	0	1	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0023	3960	1	0	1	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0024	3959	1	1	0	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0025	3961	1	0	0	1	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0026	3959	1	1	0	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0027	3959	1	1	0	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0028	3959	1	1	0	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0029	3960	1	1	0	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0030	3961	1	1	0	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0031	3959	1	1	0	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0032	3959	1	1	0	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPEPLD_chr7_103094776_103154099	0/0	t0033	3961	1	1	0	0	0	0	copy fasta	NAPEPLD	chr7	103094776	103154099
NAPG_chr18_10521027_10557764	0/0	t0001	2621	148	23	26	78	7	14	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	1/1	t0002	2621	112	18	28	48	3	13	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0003	2621	56	0	11	38	1	6	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0004	2622	23	16	2	5	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0005	2621	19	0	4	15	0	0	copy fasta	NAPG	chr18	10521027	10557764
NAPG_chr18_10521027_10557764	0/0	t0006	2622	9	9	0	0	0	0	copy fasta	NAPG	chr18	10521027	10557764